INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-qi-core --branch Branch_1.6.0 repo DEBUG:root:Time to deadline 35879.998076 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35859.004845 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35857.784923 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.4 npm notice Changelog: npm notice Run `npm install -g npm@11.6.4` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-qi-core/ -out /scratch/repo DEBUG:root:Time to deadline 35850.837059 seconds FHIR IG Publisher Version 2.0.27 (Git# 07050daf807f). Built 2025-11-28T20:03:59.255Z (3 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-qi-core/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, December 2, 2025, 2:20:55 PM Coordinated Universal Time (2025-12-02T14:20:55Z) Build FHIR IG from /scratch/repo (00:00.024 / 00:00.025, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.027, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.030, 97Mb) Root directory: /scratch/repo (00:00.009 / 00:00.039, 97Mb) Load Template from hl7.fhir.template#current (00:01.313 / 00:01.352, 78Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:01.372 / 00:02.725, 150Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.170 / 00:02.896, 150Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.801 / 00:07.697, 158Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.011 / 00:07.708, 158Mb) Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-15364442415402315894.html Connect to Terminology Server at http://tx.fhir.org (00:28.535 / 00:36.244, 599Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:36.892 / 01:13.136, 896Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Installing fhir.dicom#2024.1.20240120 to the package cache  Fetching:  Installing fhir.dicom#2024.1.20240120  done. Load Package fhir.dicom#2024.1.20240120 Installing hl7.terminology#5.4.0 to the package cache  Fetching:  Installing hl7.terminology#5.4.0  done. Load Package hl7.terminology#5.4.0 Installing hl7.fhir.uv.tools.r4#0.8.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.8.0  done. Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:26.064 / 01:39.201, 1Gb) Load IG (00:00.000 / 01:39.201, 1Gb) Load Translations (00:00.003 / 01:39.205, 1Gb) Load Content (00:00.000 / 01:39.205, 1Gb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.107 / 01:39.313, 1Gb) Process Loaded Resources (00:03.597 / 01:42.910, 550Mb) Generating Snapshots (00:01.422 / 01:44.332, 978Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/qicore/package-list.json for version check (00:04.578 / 01:48.910, 933Mb) Checking Language (00:00.253 / 01:49.164, 941Mb) Load Dependency Info (00:00.004 / 01:49.169, 941Mb) Load Info (00:00.002 / 01:49.171, 941Mb) Load Paths (00:00.001 / 01:49.173, 946Mb) Check R4 / R4B (00:00.000 / 01:49.173, 946Mb) Assign Comparison Ids (00:00.067 / 01:49.241, 965Mb) Propagating status (00:00.000 / 01:49.241, 965Mb) Generating Narratives (00:00.000 / 01:49.241, 965Mb) Validating Conformance Resources (00:06.709 / 01:55.951, 1Gb) Check profiles & code systems (00:33.586 / 02:29.537, 1Gb) Check realm rules (00:00.008 / 02:29.545, 1Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:13.167 / 02:42.713, 5Gb) Installing hl7.fhir.us.qicore#8.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.qicore#8.0.0-ballot  done. Installing hl7.terminology.r4#6.4.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.4.0  done. Installing hl7.fhir.uv.smart-app-launch#2.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.2.0  done. Installing hl7.fhir.uv.extensions#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#5.1.0-snapshot1  done. FHIR Version mismatch in package hl7.fhir.uv.extensions#5.1.0-snapshot1: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.qicore#8.0.0-ballot -> hl7.fhir.us.core#8.0.0 -> hl7.fhir.uv.smart-app-launch#2.2.0) Installing hl7.terminology.r5#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r5#5.3.0  done. FHIR Version mismatch in package hl7.terminology.r5#5.3.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.qicore#8.0.0-ballot -> hl7.fhir.us.core#8.0.0 -> hl7.fhir.uv.smart-app-launch#2.2.0 -> hl7.fhir.uv.extensions#5.1.0-snapshot1) Installing hl7.terminology#5.5.0 to the package cache  Fetching:  Installing hl7.terminology#5.5.0  done. Installing us.nlm.vsac#0.23.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.23.0  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Installing fhir.dicom#2025.2.20250411 to the package cache  Fetching:  Installing fhir.dicom#2025.2.20250411  done. Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Installing hl7.fhir.uv.cql#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cql#2.0.0  done. Checking for Bundles to sign (10:29.931 / 13:12.644, 5Gb) Validating Resources (00:00.000 / 13:12.644, 5Gb) Processing Provenance Records (00:16.596 / 13:29.241, 8Gb) Generating Translation artifacts (00:00.000 / 13:29.242, 8Gb) Generating Outputs in /scratch/repo/output (00:00.002 / 13:29.244, 8Gb) Generate Native Outputs (00:00.385 / 13:29.630, 8Gb) Run Template (00:24.803 / 13:54.434, 2Gb) Generate HTML Outputs (00:02.637 / 13:57.071, 3Gb) Generate Spreadsheets (01:09.835 / 15:06.907, 2Gb) Generate Summaries (00:12.845 / 15:19.753, 6Gb) Generating Summary Outputs (en) (00:00.000 / 15:19.753, 6Gb) DB Cumulative Time invested: 00:00:04.356 Sending Usage Stats to Server (00:24.907 / 15:44.661, 11Gb) ## Memory (MB): Use = 11495, Free = 7512, Total = 19008, Max = 19008 (00:00.012 / 15:44.673, 11Gb) Reclaiming memory... (00:00.000 / 15:44.674, 11Gb) ## Memory (MB): Use = 1971, Free = 17036, Total = 19008, Max = 19008 (00:02.647 / 15:47.322, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.008 / 15:47.330, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 15:47.330, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 15:47.330, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 15:47.330, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.511 / 15:47.842, 1Gb) Jekyll: Generating... (00:00.000 / 15:47.842, 1Gb) Jekyll has failed. Complete output from running Jekyll:  Liquid Exception: Could not locate the included file 'dependency-table.xhtml' in any of ["/scratch/repo/temp/pages/_includes"]. Ensure it exists in one of those directories and, if it is a symlink, does not point outside your site source. in en/down (00:09.584 / 15:57.427, 1Gb) Note: Check that Jekyll is installed correctly (00:00.000 / 15:57.427, 1Gb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.055 / 15:57.482, 1Gb) (00:00.000 / 15:57.482, 1Gb) Use -? to get command line help (00:00.000 / 15:57.482, 1Gb) (00:00.000 / 15:57.482, 1Gb) Stack Dump (for debugging): (00:00.000 / 15:57.482, 1Gb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runJekyll(PublisherGenerator.java:3796) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runTool(PublisherGenerator.java:3683) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:381) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:427) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:231) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1593)