INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-pacio-rt --branch master repo DEBUG:root:Time to deadline 35879.9983 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35877.629037 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35874.357967 seconds /usr/local/bin/sushi -> /usr/local/lib/node_modules/fsh-sushi/dist/app.js > es5-ext@0.10.61 postinstall /usr/local/lib/node_modules/fsh-sushi/node_modules/es5-ext > node -e "try{require('./_postinstall')}catch(e){}" || exit 0 npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@2.3.2 (node_modules/fsh-sushi/node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@2.3.2: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) + fsh-sushi@2.7.0 added 952 packages from 491 contributors in 10.139s DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org/r4 -target https://build.fhir.org/ig/HL7/fhir-pacio-rt/ -out /scratch/ig-build-temp-PTOSH6/repo DEBUG:root:Time to deadline 35863.865965 seconds FHIR IG Publisher Version 1.2.4 (Git# e311fd22181a). Built 2022-09-27T16:09:10.361Z (5 days old) Detected Java version: 11.0.9 from /usr/local/openjdk-11 on Linux/amd64 (64bit). 18366MB available dir = /scratch/ig-build-temp-PTOSH6/repo, path = /usr/local/rvm/bin:/usr/local/rvm/rubies/ruby-2.5.1/bin:/usr/local/openjdk-11/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org/r4 -target https://build.fhir.org/ig/HL7/fhir-pacio-rt/ -out /scratch/ig-build-temp-PTOSH6/repo Start Clock @ Monday, October 3, 2022 at 12:57:12 AM Coordinated Universal Time (2022-10-03T00:57:12Z) API keys loaded from /etc/ig.builder.keyfile.ini (00:00.004) Package Cache: var/lib/.fhir/packages (00:00.007) Run Sushi on /scratch/ig-build-temp-PTOSH6/repo (00:00.007) Sushi: info Running SUSHI v2.7.0 (implements FHIR Shorthand specification v2.0.0) (00:00.356) Sushi: info Arguments: (00:00.357) Sushi: info --out /scratch/ig-build-temp-PTOSH6/repo (00:00.357) Sushi: info /scratch/ig-build-temp-PTOSH6/repo (00:00.357) Sushi: info Using configuration file: /scratch/ig-build-temp-PTOSH6/repo/sushi-config.yaml (00:00.911) Sushi: info Importing FSH text... (00:00.921) Sushi: info Preprocessed 13 documents with 29 aliases. (00:01.129) Sushi: info Imported 9 definitions and 335 instances. (00:01.192) Sushi: info Checking local cache for hl7.fhir.us.core#3.1.1... (00:01.193) Sushi: info Did not find hl7.fhir.us.core#3.1.1 in local cache. (00:01.193) Sushi: info Downloading hl7.fhir.us.core#3.1.1... (00:01.194) Sushi: info Checking local cache for hl7.fhir.r4.core#4.0.1... (00:01.207) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in local cache. (00:01.207) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... (00:01.207) Sushi: info Downloaded hl7.fhir.us.core#3.1.1 (00:02.473) Sushi: info Loaded package hl7.fhir.us.core#3.1.1 (00:02.592) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.903) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:05.081) Sushi: info Converting FSH to FHIR resources... (00:05.135) Sushi: info Converted 2 FHIR StructureDefinitions. (00:05.483) Sushi: info Converted 3 FHIR CodeSystems. (00:05.517) Sushi: info Converted 4 FHIR ValueSets. (00:05.536) Sushi: info Converted 335 FHIR instances. (00:09.257) Sushi: info Exporting FHIR resources as JSON... (00:09.258) Sushi: info Exported 344 FHIR resources as JSON. (00:09.312) Sushi: info Assembling Implementation Guide sources... (00:09.312) Sushi: info Generated ImplementationGuide-hl7.fhir.us.pacio-rt.json (00:09.325) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:09.325) Sushi: (00:09.325) Sushi: ========================= SUSHI RESULTS =========================== (00:09.326) Sushi: | ------------------------------------------------------------- | (00:09.326) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:09.326) Sushi: | |-------------------------------------------------------------| | (00:09.326) Sushi: | | 1 | 1 | 0 | 0 | | (00:09.327) Sushi: | ------------------------------------------------------------- | (00:09.327) Sushi: | ------------------------------------------------------------- | (00:09.327) Sushi: | | ValueSets | CodeSystems | Instances | | (00:09.327) Sushi: | |-------------------------------------------------------------| | (00:09.327) Sushi: | | 4 | 3 | 335 | | (00:09.327) Sushi: | ------------------------------------------------------------- | (00:09.327) Sushi: | | (00:09.327) Sushi: =================================================================== (00:09.327) Sushi: | It doesn't get any betta than this! 0 Errors 0 Warnings | (00:09.327) Sushi: =================================================================== (00:09.327) Sushi: (00:09.328) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:09.977) Load Template from hl7.fhir.template#current (00:10.574) Installing hl7.fhir.template#current to the package cache Fetching: Installing: done. Load Template from hl7.base.template#current (00:10.928) Installing hl7.base.template#current to the package cache Fetching: Installing: done. Load Template from fhir.base.template#current (00:10.940) Installing fhir.base.template#current to the package cache Fetching: . Installing: . done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onLoad-ig-working.xml to /scratch/ig-build-temp-PTOSH6/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/ig-build-temp-PTOSH6/repo (00:13.134) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: .................................................................................................... Installing: .................................................................................................... done. Terminology Cache is at /scratch/ig-build-temp-PTOSH6/repo/input-cache/txcache. Trimming now (00:22.742) Connect to Terminology Server at http://tx.fhir.org/r4 (00:22.744) 2022-10-03 00:57:43.049 [main] INFO o.h.f.u.npm.BasePackageCacheManager [BasePackageCacheManager.java:83] Failed to resolve package hl7.fhir.pubpack#0.1.1 from server: http://packages.fhir.org (Invalid HTTP response 404 from http://packages.fhir.org/hl7.fhir.pubpack/0.1.1 (Not Found) (content in /tmp/fhir-http-2.log)) Installing hl7.fhir.pubpack#0.1.1 to the package cache Fetching: .......... Installing: .......... done. Load Package hl7.fhir.pubpack#0.1.1 Installing hl7.fhir.xver-extensions#0.0.11 to the package cache Fetching: Installing: done. Load Package hl7.fhir.xver-extensions#0.0.11 Installing hl7.fhir.uv.tools#current to the package cache Fetching: Installing: done. Installing hl7.terminology.r4#4.0.0 to the package cache Fetching: .................................................................................... Installing: .................................................................................... done. Load Package hl7.terminology.r4#4.0.0 Load Package hl7.fhir.uv.tools#0.1.0 Load Package hl7.terminology.r4#4.0.0 Installing hl7.fhir.us.core#3.1.1 to the package cache Fetching: ..... Installing: ..... done. Load Package hl7.fhir.us.core#3.1.1 Load R5 ExtensionsInstalling hl7.fhir.r5.core#current to the package cache Fetching: ............................................................................................. Installing: ............................................................................................. done. - 123 resources (01:15.627) Initialization complete (01:15.683) Fetch http://hl7.org/fhir/us/pacio-rt/package-list.json for version check (01:15.685) Load Content (01:15.798) loadPrePages from FetchedFile[/scratch/ig-build-temp-PTOSH6/repo/fsh-generated/includes] as /scratch/ig-build-temp-PTOSH6/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/ig-build-temp-PTOSH6/repo/input/pagecontent] as /scratch/ig-build-temp-PTOSH6/repo/input/pagecontent Processing Conformance Resources (01:16.348) Generating Snapshots (01:16.461) Propagating status (01:16.524) Generating Narratives (01:16.524) Validating Conformance Resources (01:22.766) Installing hl7.fhir.us.core#current to the package cache Fetching: ........ Installing: ........ done. US Core Comparisons Finished Installing hl7.fhir.us.pacio-rt#1.0.0 to the package cache Fetching: ....... Installing: ....... done. Installing hl7.fhir.uv.tools#current to the package cache Fetching: Installing: done. Installing hl7.terminology.r4#4.0.0 to the package cache Fetching: .................................................................................... Installing: .................................................................................... done. Validating Resources (01:32.852) Processing Provenance Records (02:05.512) Generating Outputs in /scratch/ig-build-temp-PTOSH6/repo/output (02:05.512) Run Template (02:06.014) onGenerate.checkVersions: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-PTOSH6/repo/template/versions.txt [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-PTOSH6/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-PTOSH6/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 17 files to /scratch/ig-build-temp-PTOSH6/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-working.1.xml to /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-PTOSH6/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-PTOSH6/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-PTOSH6/repo/template/properties.txt [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-pacio-rt.xml [get] To: /scratch/ig-build-temp-PTOSH6/repo/input-cache/jiraspec.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-pacio-rt.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/FHIR-us-pacio-rt.xml onGenerate.jira.generate: [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/package-list.tmp.xml to /scratch/ig-build-temp-PTOSH6/repo/template/package-list.xml [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.package-list.xslt [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/jira.tmp.xml to /scratch/ig-build-temp-PTOSH6/repo/template/jira.xml [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.jira.xslt [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/template/jira.xml to /scratch/ig-build-temp-PTOSH6/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/ig-build-temp-PTOSH6/repo/input-cache/jiraspec.xml to /scratch/ig-build-temp-PTOSH6/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/ig-build-temp-PTOSH6/repo/template/scripts/onGenerate.normalize.xslt onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (02:08.241) Generating Summary Outputs (02:11.093) Sending Usage Stats to Server (04:24.396) ## Memory (MB): Use = 2844, Free = 15522, Total = 18366, Max =18366 Reclaiming memory... ## Memory (MB): Use = 655, Free = 17711, Total = 18366, Max =18366 Run jekyll: jekyll build --destination "/scratch/ig-build-temp-PTOSH6/repo/output" (in folder /scratch/ig-build-temp-PTOSH6/repo/temp/pages) (04:26.474) Jekyll: Source: /scratch/ig-build-temp-PTOSH6/repo/temp/pages (04:26.821) Jekyll: Generating... (04:26.821) Jekyll: done in 4.311 seconds. (04:31.132) Checking Output HTML (04:31.537) found 3292 files (04:31.551) ........................................ ........................................ ... 3292 html files, 0 pages invalid xhtml (0%) (04:40.470) ... 135272 links, 0 broken links (0%) (04:40.471) Build final .zip (04:40.471) Final .zip built (04:42.337) Built. Times: loading: 00:00.549, generate: 03:26.798, narrative generation: 00:06.242, realm-rules: 00:01.319, previous-version: 00:06.808, jekyll: 00:04.687, validation: 00:34.591 (#347), template: 00:02.226 (#3) (04:43.151) Validation output in /scratch/ig-build-temp-PTOSH6/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links: 0 (04:43.888) Finished (04:43.889) Done (04:43.889)