FHIR to OMOP FHIR IG
0.1.0 - ci-build
FHIR to OMOP FHIR IG
0.1.0 - ci-build
FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions
| Page standards status: Draft | Maturity Level: 1 |
Definitions for the Specimen logical model.
Guidance on how to interpret the contents of this table can be found here
| 0. Specimen | |
| Definition | The specimen domain contains the records identifying biological samples from a person. |
| Short | Specimen OMOP Table |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| 2. Specimen.specimen-id | |
| Definition | Specimen Identifier |
| Short | Specimen Identifier |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 4. Specimen.person-id | |
| Definition | The person from whom the specimen is collected. |
| Short | Person |
| Control | 1..1 |
| Type | Reference(Person OMOP Table) |
| 6. Specimen.specimen-concept-id | |
| Definition | Specimen |
| Short | Specimen |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 8. Specimen.specimen-type-concept-id | |
| Definition | Specimen Type |
| Short | Specimen Type |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 10. Specimen.specimen-date | |
| Definition | The date the specimen was collected. |
| Short | Specimen Date |
| Control | 1..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 12. Specimen.specimen-datetime | |
| Definition | Specimen Datetime |
| Short | Specimen Datetime |
| Control | 0..1 |
| Type | dateTime |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 14. Specimen.quantity | |
| Definition | The amount of specimen collected from the person. |
| Short | Quantity |
| Control | 0..1 |
| Type | integer |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 16. Specimen.unit-concept-id | |
| Definition | The unit for the quantity of the specimen. |
| Short | Unit |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 18. Specimen.anatomic-site-concept-id | |
| Definition | This is the site on the body where the specimen is from. |
| Short | Anatomic Site |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 20. Specimen.disease-status-concept-id | |
| Definition | Disease Status |
| Short | Disease Status |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 22. Specimen.specimen-source-id | |
| Definition | This is the identifier for the specimen from the source system. |
| Short | Specimen Source |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 24. Specimen.specimen-source-value | |
| Definition | Specimen Source Value |
| Short | Specimen Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 26. Specimen.unit-source-value | |
| Definition | Unit Source Value |
| Short | Unit Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 28. Specimen.anatomic-site-source-value | |
| Definition | Anatomic Site Source Value |
| Short | Anatomic Site Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 30. Specimen.disease-status-source-value | |
| Definition | Disease Site Source Value |
| Short | Disease Site Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
Guidance on how to interpret the contents of this table can be found here
| 0. Specimen | |
| Definition | The specimen domain contains the records identifying biological samples from a person. Base definition for all types defined in FHIR type system. |
| Short | Specimen OMOP TableBase for all types and resources |
| Control | 0..* |
| Is Modifier | false |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| 2. Specimen.specimen-id | |
| Definition | Specimen Identifier |
| Short | Specimen Identifier |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 4. Specimen.person-id | |
| Definition | The person from whom the specimen is collected. |
| Short | Person |
| Control | 1..1 |
| Type | Reference(Person OMOP Table) |
| 6. Specimen.specimen-concept-id | |
| Definition | Specimen |
| Short | Specimen |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 8. Specimen.specimen-type-concept-id | |
| Definition | Specimen Type |
| Short | Specimen Type |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 10. Specimen.specimen-date | |
| Definition | The date the specimen was collected. |
| Short | Specimen Date |
| Control | 1..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 12. Specimen.specimen-datetime | |
| Definition | Specimen Datetime |
| Short | Specimen Datetime |
| Control | 0..1 |
| Type | dateTime |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 14. Specimen.quantity | |
| Definition | The amount of specimen collected from the person. |
| Short | Quantity |
| Control | 0..1 |
| Type | integer |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 16. Specimen.unit-concept-id | |
| Definition | The unit for the quantity of the specimen. |
| Short | Unit |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 18. Specimen.anatomic-site-concept-id | |
| Definition | This is the site on the body where the specimen is from. |
| Short | Anatomic Site |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 20. Specimen.disease-status-concept-id | |
| Definition | Disease Status |
| Short | Disease Status |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 22. Specimen.specimen-source-id | |
| Definition | This is the identifier for the specimen from the source system. |
| Short | Specimen Source |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 24. Specimen.specimen-source-value | |
| Definition | Specimen Source Value |
| Short | Specimen Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 26. Specimen.unit-source-value | |
| Definition | Unit Source Value |
| Short | Unit Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 28. Specimen.anatomic-site-source-value | |
| Definition | Anatomic Site Source Value |
| Short | Anatomic Site Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 30. Specimen.disease-status-source-value | |
| Definition | Disease Site Source Value |
| Short | Disease Site Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
Guidance on how to interpret the contents of this table can be found here
| 0. Specimen | |
| Definition | The specimen domain contains the records identifying biological samples from a person. |
| Short | Specimen OMOP Table |
| Control | 0..* |
| Is Modifier | false |
| Logical Model | Instances of this logical model are not marked to be the target of a Reference |
| 2. Specimen.specimen-id | |
| Definition | Specimen Identifier |
| Short | Specimen Identifier |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 4. Specimen.person-id | |
| Definition | The person from whom the specimen is collected. |
| Short | Person |
| Control | 1..1 |
| Type | Reference(Person OMOP Table) |
| 6. Specimen.specimen-concept-id | |
| Definition | Specimen |
| Short | Specimen |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 8. Specimen.specimen-type-concept-id | |
| Definition | Specimen Type |
| Short | Specimen Type |
| Control | 1..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 10. Specimen.specimen-date | |
| Definition | The date the specimen was collected. |
| Short | Specimen Date |
| Control | 1..1 |
| Type | date |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 12. Specimen.specimen-datetime | |
| Definition | Specimen Datetime |
| Short | Specimen Datetime |
| Control | 0..1 |
| Type | dateTime |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 14. Specimen.quantity | |
| Definition | The amount of specimen collected from the person. |
| Short | Quantity |
| Control | 0..1 |
| Type | integer |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 16. Specimen.unit-concept-id | |
| Definition | The unit for the quantity of the specimen. |
| Short | Unit |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 18. Specimen.anatomic-site-concept-id | |
| Definition | This is the site on the body where the specimen is from. |
| Short | Anatomic Site |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 20. Specimen.disease-status-concept-id | |
| Definition | Disease Status |
| Short | Disease Status |
| Control | 0..1 |
| Type | code |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 22. Specimen.specimen-source-id | |
| Definition | This is the identifier for the specimen from the source system. |
| Short | Specimen Source |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 24. Specimen.specimen-source-value | |
| Definition | Specimen Source Value |
| Short | Specimen Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 26. Specimen.unit-source-value | |
| Definition | Unit Source Value |
| Short | Unit Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 28. Specimen.anatomic-site-source-value | |
| Definition | Anatomic Site Source Value |
| Short | Anatomic Site Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
| 30. Specimen.disease-status-source-value | |
| Definition | Disease Site Source Value |
| Short | Disease Site Source Value |
| Control | 0..1 |
| Type | string |
| Primitive Value | This primitive element may be present, or absent, or replaced by an extension |
IG © 2023+ HL7 International / Biomedical Research and Regulation. Package hl7.fhir.uv.omop#0.1.0 based on FHIR 5.0.0. Generated 2024-08-21
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