FHIR to OMOP FHIR IG
0.1.0 - ci-build International flag

FHIR to OMOP FHIR IG, published by HL7 International / Biomedical Research and Regulation. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/fhir-omop-ig/ and changes regularly. See the Directory of published versions

Logical Model: ProcedureOccurrence - Detailed Descriptions

Page standards status: Draft Maturity Level: 1

Definitions for the ProcedureOccurrence logical model.

Guidance on how to interpret the contents of this table can be found here

0. ProcedureOccurrence
Definition

This table contains records of activities or processes ordered by, or carried out by, a healthcare provider on the patient with a diagnostic or therapeutic purpose.

ShortProcedure Occurrence OMOP Table
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. ProcedureOccurrence.procedure-occurrence-id
Definition

The unique key given to a procedure record for a person. Refer to the ETL for how duplicate procedures during the same visit were handled.

ShortProcedure Occurrence Identifier
Control1..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. ProcedureOccurrence.person-id
Definition

The PERSON_ID of the PERSON for whom the procedure is recorded. This may be a system generated code.

ShortPerson
Control1..1
TypeReference(Person OMOP Table)
6. ProcedureOccurrence.procedure-concept-id
Definition

The PROCEDURE_CONCEPT_ID field is recommended for primary use in analyses, and must be used for network studies. This is the standard concept mapped from the source value which represents a procedure

ShortProcedure
Control1..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
8. ProcedureOccurrence.procedure-date
Definition

Use this date to determine the date the procedure started.

ShortProcedure Date
Control1..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. ProcedureOccurrence.procedure-datetime
Definition

Procedure Datetime

ShortProcedure Datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. ProcedureOccurrence.procedure-end-date
Definition

Use this field to house the date that the procedure ended.

ShortProcedure End Date
Control0..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. ProcedureOccurrence.procedure-end-datetime
Definition

Use this field to house the datetime that the procedure ended.

Shortprocedure_end_datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
16. ProcedureOccurrence.procedure-type-concept-id
Definition

This field can be used to determine the provenance of the Procedure record, as in whether the procedure was from an EHR system, insurance claim, registry, or other sources.

ShortProcedure Type
Control1..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
18. ProcedureOccurrence.modifier-concept-id
Definition

The modifiers are intended to give additional information about the procedure but as of now the vocabulary is under review.

ShortModifier
Control0..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. ProcedureOccurrence.quantity
Definition

If the quantity value is omitted, a single procedure is assumed.

ShortQuantity
Control0..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. ProcedureOccurrence.provider-id
Definition

The provider associated with the procedure record, e.g. the provider who performed the Procedure.

ShortProvider
Control0..1
TypeReference(Provider OMOP Table)
24. ProcedureOccurrence.visit-occurrence-id
Definition

The visit during which the procedure occurred.

ShortVisitOccurrence
Control0..1
TypeReference(Visit Occurrence OMOP Table)
26. ProcedureOccurrence.visit-detail-id
Definition

The VISIT_DETAIL record during which the Procedure occurred. For example, if the Person was in the ICU at the time of the Procedure the VISIT_OCCURRENCE record would reflect the overall hospital stay and the VISIT_DETAIL record would reflect the ICU stay during the hospital visit.

ShortVisit Detail
Control0..1
TypeReference(Visit Detail OMOP Table)
28. ProcedureOccurrence.procedure-source-value
Definition

This field houses the verbatim value from the source data representing the procedure that occurred. For example, this could be an CPT4 or OPCS4 code.

ShortProcedure Source Value
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
30. ProcedureOccurrence.procedure-source-concept-id
Definition

This is the concept representing the procedure source value and may not necessarily be standard. This field is discouraged from use in analysis because it is not required to contain Standard Concepts that are used across the OHDSI community, and should only be used when Standard Concepts do not adequately represent the source detail for the Procedure necessary for a given analytic use case. Consider using PROCEDURE_CONCEPT_ID instead to enable standardized analytics that can be consistent across the network.

ShortProcedure Source Concept
Control0..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
32. ProcedureOccurrence.modifier-source-value
Definition

Modifier Source Value

ShortModifier Source Value
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be found here

0. ProcedureOccurrence
Definition

This table contains records of activities or processes ordered by, or carried out by, a healthcare provider on the patient with a diagnostic or therapeutic purpose.


Base definition for all types defined in FHIR type system.

ShortProcedure Occurrence OMOP TableBase for all types and resources
Control0..*
Is Modifierfalse
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. ProcedureOccurrence.procedure-occurrence-id
Definition

The unique key given to a procedure record for a person. Refer to the ETL for how duplicate procedures during the same visit were handled.

ShortProcedure Occurrence Identifier
Control1..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. ProcedureOccurrence.person-id
Definition

The PERSON_ID of the PERSON for whom the procedure is recorded. This may be a system generated code.

ShortPerson
Control1..1
TypeReference(Person OMOP Table)
6. ProcedureOccurrence.procedure-concept-id
Definition

The PROCEDURE_CONCEPT_ID field is recommended for primary use in analyses, and must be used for network studies. This is the standard concept mapped from the source value which represents a procedure

ShortProcedure
Control1..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
8. ProcedureOccurrence.procedure-date
Definition

Use this date to determine the date the procedure started.

ShortProcedure Date
Control1..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. ProcedureOccurrence.procedure-datetime
Definition

Procedure Datetime

ShortProcedure Datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. ProcedureOccurrence.procedure-end-date
Definition

Use this field to house the date that the procedure ended.

ShortProcedure End Date
Control0..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. ProcedureOccurrence.procedure-end-datetime
Definition

Use this field to house the datetime that the procedure ended.

Shortprocedure_end_datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
16. ProcedureOccurrence.procedure-type-concept-id
Definition

This field can be used to determine the provenance of the Procedure record, as in whether the procedure was from an EHR system, insurance claim, registry, or other sources.

ShortProcedure Type
Control1..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
18. ProcedureOccurrence.modifier-concept-id
Definition

The modifiers are intended to give additional information about the procedure but as of now the vocabulary is under review.

ShortModifier
Control0..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. ProcedureOccurrence.quantity
Definition

If the quantity value is omitted, a single procedure is assumed.

ShortQuantity
Control0..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. ProcedureOccurrence.provider-id
Definition

The provider associated with the procedure record, e.g. the provider who performed the Procedure.

ShortProvider
Control0..1
TypeReference(Provider OMOP Table)
24. ProcedureOccurrence.visit-occurrence-id
Definition

The visit during which the procedure occurred.

ShortVisitOccurrence
Control0..1
TypeReference(Visit Occurrence OMOP Table)
26. ProcedureOccurrence.visit-detail-id
Definition

The VISIT_DETAIL record during which the Procedure occurred. For example, if the Person was in the ICU at the time of the Procedure the VISIT_OCCURRENCE record would reflect the overall hospital stay and the VISIT_DETAIL record would reflect the ICU stay during the hospital visit.

ShortVisit Detail
Control0..1
TypeReference(Visit Detail OMOP Table)
28. ProcedureOccurrence.procedure-source-value
Definition

This field houses the verbatim value from the source data representing the procedure that occurred. For example, this could be an CPT4 or OPCS4 code.

ShortProcedure Source Value
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
30. ProcedureOccurrence.procedure-source-concept-id
Definition

This is the concept representing the procedure source value and may not necessarily be standard. This field is discouraged from use in analysis because it is not required to contain Standard Concepts that are used across the OHDSI community, and should only be used when Standard Concepts do not adequately represent the source detail for the Procedure necessary for a given analytic use case. Consider using PROCEDURE_CONCEPT_ID instead to enable standardized analytics that can be consistent across the network.

ShortProcedure Source Concept
Control0..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
32. ProcedureOccurrence.modifier-source-value
Definition

Modifier Source Value

ShortModifier Source Value
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be found here

0. ProcedureOccurrence
Definition

This table contains records of activities or processes ordered by, or carried out by, a healthcare provider on the patient with a diagnostic or therapeutic purpose.

ShortProcedure Occurrence OMOP Table
Control0..*
Is Modifierfalse
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. ProcedureOccurrence.procedure-occurrence-id
Definition

The unique key given to a procedure record for a person. Refer to the ETL for how duplicate procedures during the same visit were handled.

ShortProcedure Occurrence Identifier
Control1..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. ProcedureOccurrence.person-id
Definition

The PERSON_ID of the PERSON for whom the procedure is recorded. This may be a system generated code.

ShortPerson
Control1..1
TypeReference(Person OMOP Table)
6. ProcedureOccurrence.procedure-concept-id
Definition

The PROCEDURE_CONCEPT_ID field is recommended for primary use in analyses, and must be used for network studies. This is the standard concept mapped from the source value which represents a procedure

ShortProcedure
Control1..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
8. ProcedureOccurrence.procedure-date
Definition

Use this date to determine the date the procedure started.

ShortProcedure Date
Control1..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. ProcedureOccurrence.procedure-datetime
Definition

Procedure Datetime

ShortProcedure Datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. ProcedureOccurrence.procedure-end-date
Definition

Use this field to house the date that the procedure ended.

ShortProcedure End Date
Control0..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. ProcedureOccurrence.procedure-end-datetime
Definition

Use this field to house the datetime that the procedure ended.

Shortprocedure_end_datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
16. ProcedureOccurrence.procedure-type-concept-id
Definition

This field can be used to determine the provenance of the Procedure record, as in whether the procedure was from an EHR system, insurance claim, registry, or other sources.

ShortProcedure Type
Control1..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
18. ProcedureOccurrence.modifier-concept-id
Definition

The modifiers are intended to give additional information about the procedure but as of now the vocabulary is under review.

ShortModifier
Control0..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. ProcedureOccurrence.quantity
Definition

If the quantity value is omitted, a single procedure is assumed.

ShortQuantity
Control0..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. ProcedureOccurrence.provider-id
Definition

The provider associated with the procedure record, e.g. the provider who performed the Procedure.

ShortProvider
Control0..1
TypeReference(Provider OMOP Table)
24. ProcedureOccurrence.visit-occurrence-id
Definition

The visit during which the procedure occurred.

ShortVisitOccurrence
Control0..1
TypeReference(Visit Occurrence OMOP Table)
26. ProcedureOccurrence.visit-detail-id
Definition

The VISIT_DETAIL record during which the Procedure occurred. For example, if the Person was in the ICU at the time of the Procedure the VISIT_OCCURRENCE record would reflect the overall hospital stay and the VISIT_DETAIL record would reflect the ICU stay during the hospital visit.

ShortVisit Detail
Control0..1
TypeReference(Visit Detail OMOP Table)
28. ProcedureOccurrence.procedure-source-value
Definition

This field houses the verbatim value from the source data representing the procedure that occurred. For example, this could be an CPT4 or OPCS4 code.

ShortProcedure Source Value
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
30. ProcedureOccurrence.procedure-source-concept-id
Definition

This is the concept representing the procedure source value and may not necessarily be standard. This field is discouraged from use in analysis because it is not required to contain Standard Concepts that are used across the OHDSI community, and should only be used when Standard Concepts do not adequately represent the source detail for the Procedure necessary for a given analytic use case. Consider using PROCEDURE_CONCEPT_ID instead to enable standardized analytics that can be consistent across the network.

ShortProcedure Source Concept
Control0..1
Typecode
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
32. ProcedureOccurrence.modifier-source-value
Definition

Modifier Source Value

ShortModifier Source Value
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension