INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-medmorph --branch master repo DEBUG:root:Time to deadline 35879.998349 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.131672 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.8638 seconds added 116 packages in 4s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New minor version of npm available! 9.5.1 -> 9.7.1 npm notice Changelog: npm notice Run `npm install -g npm@9.7.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-medmorph/ -out /scratch/ig-build-temp-9M0ZL5/repo DEBUG:root:Time to deadline 35873.43475 seconds FHIR IG Publisher Version 1.3.15 (Git# 38de769b8fab). Built 2023-06-08T05:36:12.232Z (12 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/ig-build-temp-9M0ZL5/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-medmorph/ -out /scratch/ig-build-temp-9M0ZL5/repo Start Clock @ Thursday, June 8, 2023, 6:17:34 PM Coordinated Universal Time (2023-06-08T18:17:34Z) Build FHIR IG from /scratch/ig-build-temp-9M0ZL5/repo (00:00.014) API keys loaded from /etc/fhir-settings.json (00:00.014) Package Cache: var/lib/.fhir/packages (00:00.017) Load Template from hl7.fhir.template#current (00:01.060) Installing hl7.fhir.template#current to the package cache Fetching: Installing: done. Load Template from hl7.base.template#current (00:01.516) Installing hl7.base.template#current to the package cache Fetching: Installing: done. Load Template from fhir.base.template#current (00:01.533) Installing fhir.base.template#current to the package cache Fetching: .. Installing: .. done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onLoad-ig-working.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/ig-build-temp-9M0ZL5/repo (00:03.746) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: .................................................................................................... Installing: .................................................................................................... done. Terminology Cache is at /scratch/ig-build-temp-9M0ZL5/repo/input-cache/txcache. Trimming now (00:15.746) Connect to Terminology Server at http://tx.fhir.org (00:15.749) Installing hl7.fhir.pubpack#0.1.4 to the package cache Fetching: .......... Installing: .......... done. Load Package hl7.fhir.pubpack#0.1.4 Installing hl7.fhir.xver-extensions#0.0.12 to the package cache Fetching: Installing: done. Load Package hl7.fhir.xver-extensions#0.0.12 Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: .................................................................................... Installing: .................................................................................... done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: .................................... Installing: .................................... done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.us.core#3.1.1 to the package cache Fetching: ..... Installing: ..... done. Load Package hl7.fhir.us.core#3.1.1 Installing hl7.fhir.uv.bulkdata#1.0.1 to the package cache Fetching: Installing: done. Load Package hl7.fhir.uv.bulkdata#1.0.1 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache Fetching: Installing: done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing hl7.fhir.uv.subscriptions-backport.r4#1.1.0 to the package cache Fetching: . Installing: . done. Ignore Core Dependency on FHIR version 4.0.1, from package 'hl7.fhir.uv.subscriptions-backport.r4#1.1.0' (00:32.711) Load Package hl7.fhir.uv.subscriptions-backport.r4#1.1.0 Installing hl7.fhir.uv.tools#current to the package cache Fetching: .. Installing: .. done. Version mismatch. This IG is version 4.0.1, while the IG 'igtools' is from version 5.0.0 (will try to run anyway) (00:32.880) Load Package hl7.fhir.uv.tools#current Load R5 SpecialsInstalling hl7.fhir.r5.core#5.0.0 to the package cache Fetching: ............................................................................ Installing: ............................................................................ done. Initialization complete (00:43.749) Fetch http://hl7.org/fhir/us/medmorph/package-list.json for version check (00:43.751) Load Content (00:43.876) Translating CQL source (00:44.042) Translating CQL source in folder /scratch/ig-build-temp-9M0ZL5/repo/input/cql (00:44.042) loadPrePages from FetchedFile[/scratch/ig-build-temp-9M0ZL5/repo/input/includes] as /scratch/ig-build-temp-9M0ZL5/repo/input/includes loadPrePages from FetchedFile[/scratch/ig-build-temp-9M0ZL5/repo/input/pagecontent] as /scratch/ig-build-temp-9M0ZL5/repo/input/pagecontent Processing Conformance Resources (00:47.126) Generating Snapshots (00:48.357) Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-plandefinition but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-triggering-valueset-library but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-valueset but trying to go on .......Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-messageheader but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-content-bundle but trying to go on Can't find Resource profile http://hl7.org/fhir/us/core/StructureDefinition/us-core-documentreference but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-messageheader but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-content-bundle but trying to go on Propagating status (00:57.957) Generating Narratives (00:57.958) Validating Conformance Resources (01:07.559) Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-plandefinition but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-triggering-valueset-library but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-valueset but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-messageheader but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-content-bundle but trying to go on Can't find Resource profile http://hl7.org/fhir/us/core/StructureDefinition/us-core-documentreference but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-messageheader but trying to go on Can't find Resource profile http://hl7.org/fhir/us/medmorph/StructureDefinition/us-ph-content-bundle but trying to go on Installing hl7.fhir.us.core#6.1.0-snapshot1 to the package cache Fetching: ......... Installing: ......... done. US Core Comparisons Finished Installing hl7.fhir.us.medmorph#0.2.0 to the package cache Fetching: . Installing: . done. Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: .................................................................................................... Installing: .................................................................................................... done. Installing hl7.fhir.us.core#3.1.1 to the package cache Fetching: ..... Installing: ..... done. Installing hl7.fhir.uv.bulkdata#1.0.0 to the package cache Fetching: Installing: done. Installing hl7.fhir.uv.subscriptions-backport#0.1.0 to the package cache Fetching: Installing: done. Validating Resources (01:36.246) Processing Provenance Records (01:36.946) Generating Outputs in /scratch/ig-build-temp-9M0ZL5/repo/output (01:36.947) Generate Native Outputs (01:37.108) Run Template (01:47.118) onGenerate.checkVersions: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/versions.txt [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-9M0ZL5/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-9M0ZL5/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 17 files to /scratch/ig-build-temp-9M0ZL5/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-working.1.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-9M0ZL5/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/properties.txt [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-medmorph.xml [get] To: /scratch/ig-build-temp-9M0ZL5/repo/input-cache/jiraspec.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-medmorph.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/FHIR-us-medmorph.xml onGenerate.jira.packagelistcopy: onGenerate.jira.packagelistget: [get] Getting: http://hl7.org/fhir/us/medmorph/package-list.json [get] To: /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.workingpackage-list.json onGenerate.jira.packagelistProcess: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.package-list.tmp.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.package-list.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.package-list.xslt onGenerate.jira.packagelistSkip: onGenerate.jira.pubrequestProcess: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.pubrequest.tmp.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.pubrequest.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.pubrequest.xslt onGenerate.jira.pubrequestSkip: onGenerate.jira.generate: [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.tmp.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.tmp2.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.process-pkg-list.xslt [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.tmp2.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.jira.xslt **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): Health Data Exchange App [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/template/onGenerate.jira.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/ig-build-temp-9M0ZL5/repo/input-cache/jiraspec.xml to /scratch/ig-build-temp-9M0ZL5/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/ig-build-temp-9M0ZL5/repo/template/scripts/onGenerate.normalize.xslt [copy] Copying 1 file to /scratch/ig-build-temp-9M0ZL5/repo onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (01:48.729) Generate HTML Outputs (01:48.730) Generate Summaries (02:29.101) Generating Summary Outputs (02:29.101) Sending Usage Stats to Server (04:44.095) ## Memory (MB): Use = 6039, Free = 12968, Total = 19008, Max =19008 Reclaiming memory... ## Memory (MB): Use = 1018, Free = 17981, Total = 19008, Max =19008 Run jekyll: jekyll build --destination "/scratch/ig-build-temp-9M0ZL5/repo/output" (in folder /scratch/ig-build-temp-9M0ZL5/repo/temp/pages) (04:44.576) Jekyll: Source: /scratch/ig-build-temp-9M0ZL5/repo/temp/pages (04:44.895) Jekyll: Generating... (04:44.895) Jekyll: done in 3.099 seconds. (04:47.994) Checking Output HTML (04:52.374) found 1681 files (04:52.380) ........................................ ........................................ ... 1681 html files, 0 pages invalid xhtml (0%) (05:28.585) ... 487503 links, 0 broken links (0%) (05:28.585) Build final .zip (05:28.586) Final .zip built (05:31.747) Built. Times: loading: 00:03.249, generate: 04:48.489, narrative generation: 00:09.601, realm-rules: 00:03.192, previous-version: 00:11.430, jekyll: 00:03.445, validation: 00:14.492 (#90), template: 00:01.611 (#3) (05:35.622) Validation output in /scratch/ig-build-temp-9M0ZL5/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links: 0 (05:35.910) Finished (05:35.923) Done (05:35.923)