INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-mdi-ig --branch master repo DEBUG:root:Time to deadline 35879.997683 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.674702 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.705038 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.4.2 npm notice Changelog: npm notice Run `npm install -g npm@11.4.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-mdi-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35870.902653 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (31 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-mdi-ig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, July 24, 2025, 2:39:54 PM Coordinated Universal Time (2025-07-24T14:39:54Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.029, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.033, 97Mb) Found dependency on hl7.fhir.us.core#5.0.1 in Sushi config. Pre-installing (00:00.006 / 00:00.039, 97Mb) Installing hl7.fhir.us.core#5.0.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#5.0.1  done. Found dependency on us.cdc.phinvads#0.12.0 in Sushi config. Pre-installing (00:03.821 / 00:03.860, 104Mb) Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Found dependency on hl7.fhir.us.vr-common-library#2.0.0 in Sushi config. Pre-installing (00:13.727 / 00:17.587, 424Mb) Installing hl7.fhir.us.vr-common-library#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.vr-common-library#2.0.0  done. Found dependency on hl7.fhir.us.vrdr#3.0.0 in Sushi config. Pre-installing (00:00.693 / 00:18.281, 432Mb) Installing hl7.fhir.us.vrdr#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.vrdr#3.0.0  done. Found dependency on hl7.fhir.us.odh#1.3.0 in Sushi config. Pre-installing (00:01.546 / 00:19.828, 448Mb) Installing hl7.fhir.us.odh#1.3.0 to the package cache  Fetching:  Installing hl7.fhir.us.odh#1.3.0  done. Run Sushi on /scratch/repo (00:00.444 / 00:20.273, 453Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.978 / 00:21.251, 466Mb) Sushi: info Arguments: (00:00.000 / 00:21.251, 466Mb) Sushi: info --require-latest (00:00.000 / 00:21.252, 466Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:21.252, 466Mb) Sushi: info /scratch/repo (00:00.000 / 00:21.252, 466Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:01.192 / 00:22.445, 466Mb) Sushi: info Importing FSH text... (00:00.185 / 00:22.631, 466Mb) Sushi: info Preprocessed 131 documents with 31 aliases. (00:00.523 / 00:23.154, 470Mb) Sushi: info Imported 35 definitions and 92 instances. (00:00.273 / 00:23.427, 470Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.239 / 00:23.667, 470Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.7.0 (00:00.639 / 00:24.306, 470Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.7.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.7.0 (00:00.001 / 00:24.307, 470Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.7.0 (00:00.775 / 00:25.082, 470Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.7.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.7.0 (00:00.002 / 00:25.085, 470Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.7.0 with 105 resources (00:00.082 / 00:25.168, 470Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.444 / 00:25.613, 470Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:25.613, 470Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.715 / 00:28.329, 470Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:28.331, 470Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:02.121 / 00:30.453, 470Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.456 / 00:30.909, 470Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:30.910, 470Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.385 / 00:32.296, 470Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:32.297, 470Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.363 / 00:32.661, 470Mb) Sushi: info Loaded hl7.fhir.us.core#5.0.1 with 194 resources (00:00.148 / 00:32.809, 470Mb) Sushi: info Loaded us.cdc.phinvads#0.12.0 with 1967 resources (00:03.084 / 00:35.894, 470Mb) Sushi: info Loaded hl7.fhir.us.vr-common-library#2.0.0 with 91 resources (00:00.092 / 00:35.986, 470Mb) Sushi: info Loaded hl7.fhir.us.vrdr#3.0.0 with 107 resources (00:00.123 / 00:36.109, 470Mb) Sushi: info Loaded hl7.fhir.us.odh#1.3.0 with 10 resources (00:00.037 / 00:36.146, 470Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:36.147, 470Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.293 / 00:39.440, 470Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:39.442, 470Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:02.064 / 00:41.506, 470Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.028 / 00:41.534, 470Mb) Sushi: info Converting FSH to FHIR resources... (00:00.028 / 00:41.563, 470Mb) Sushi: info Converted 24 FHIR StructureDefinitions. (00:06.158 / 00:47.721, 470Mb) Sushi: info Converted 2 FHIR CodeSystems. (00:00.057 / 00:47.778, 470Mb) Sushi: info Converted 9 FHIR ValueSets. (00:00.265 / 00:48.044, 470Mb) Sushi: info Converted 92 FHIR instances. (00:13.922 / 01:01.967, 470Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 01:01.968, 470Mb) Sushi: info Exported 127 FHIR resources as JSON. (00:00.167 / 01:02.135, 470Mb) Sushi: info Assembling Implementation Guide sources... (00:00.006 / 01:02.142, 470Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.mdi.json (00:00.276 / 01:02.418, 470Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:02.419, 470Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 01:02.421, 470Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:02.421, 470Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:02.421, 470Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:02.422, 470Mb) Sushi: | | 18 | 6 | 0 | 0 | | (00:00.000 / 01:02.422, 470Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:02.422, 470Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:02.422, 470Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:02.422, 470Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:02.423, 470Mb) Sushi: | | 9 | 2 | 92 | | (00:00.000 / 01:02.423, 470Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:02.423, 470Mb) Sushi: | | (00:00.000 / 01:02.423, 470Mb) Sushi: =================================================================== (00:00.000 / 01:02.424, 470Mb) Sushi: | A whale of a job! 0 Errors 0 Warnings | (00:00.000 / 01:02.424, 470Mb) Sushi: =================================================================== (00:00.000 / 01:02.424, 470Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.807 / 01:03.232, 56Mb) Load Template from hl7.fhir.template#current (00:00.744 / 01:03.977, 57Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.601 / 01:04.578, 97Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir.base.template#current (00:00.146 / 01:04.724, 97Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:04.418 / 01:09.143, 393Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.003 / 01:09.147, 393Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-1636792402787736967.html Connect to Terminology Server at http://tx.fhir.org (00:31.246 / 01:40.393, 874Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology.r4#3.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#3.1.0  done. Load Package hl7.terminology.r4#3.1.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.7.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.7.0  done. Load Package us.nlm.vsac#0.7.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (01:45.779 / 03:26.173, 424Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Load Package hl7.fhir.us.core#5.0.1 Load Package us.cdc.phinvads#0.12.0 Installing hl7.terminology.r4#6.0.2 to the package cache  Fetching:  Installing hl7.terminology.r4#6.0.2  done. Load Package hl7.terminology.r4#6.0.2 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing us.nlm.vsac#0.19.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.19.0  done. Load Package us.nlm.vsac#0.19.0 Load Package hl7.fhir.us.vr-common-library#2.0.0 Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Load Package hl7.fhir.us.odh#1.3.0 Load Package hl7.fhir.us.vrdr#3.0.0 Load Package hl7.fhir.us.odh#1.3.0 Load Package hl7.fhir.uv.tools.r4#0.7.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:53.525 / 04:19.698, 995Mb) Load IG (00:00.000 / 04:19.698, 995Mb) Load Content (00:00.001 / 04:19.700, 995Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.176 / 04:19.876, 1011Mb) Process Loaded Resources (00:02.920 / 04:22.797, 1Gb) Generating Snapshots (00:00.695 / 04:23.492, 1Gb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/mdi/package-list.json for version check (00:03.143 / 04:26.635, 1Gb) Processing Conformance Resources (00:00.163 / 04:26.799, 1Gb) Checking Language (00:00.000 / 04:26.799, 1Gb) Load Dependency Info (00:00.005 / 04:26.804, 1Gb) Load Info (00:00.002 / 04:26.806, 1Gb) Load Paths (00:00.000 / 04:26.807, 1Gb) Check R4 / R4B (00:00.000 / 04:26.808, 1Gb) Assign Comparison Ids (00:00.157 / 04:26.965, 684Mb) Propagating status (00:00.002 / 04:26.968, 684Mb) Generating Narratives (00:00.139 / 04:27.107, 732Mb) Validating Conformance Resources (00:07.025 / 04:34.133, 1Gb) Check profiles & code systems (00:54.835 / 05:28.968, 1Gb) Check realm rules (00:00.005 / 05:28.974, 1Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:27.901 / 05:56.876, 4Gb) Installing hl7.fhir.us.mdi#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.mdi#1.1.0  done. Installing hl7.terminology.r4#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.3.0  done. Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Installing hl7.fhir.us.vrdr#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.vrdr#2.1.0  done. Installing hl7.fhir.us.odh#1.2.0 to the package cache  Fetching:  Installing hl7.fhir.us.odh#1.2.0  done. Installing hl7.fhir.us.core#3.1.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#3.1.1  done. Checking for Bundles to sign (01:21.590 / 07:18.466, 1Gb) Validating Resources (00:00.000 / 07:18.467, 1Gb) Processing Provenance Records (00:42.982 / 08:01.449, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 08:01.449, 2Gb) Generate Native Outputs (00:00.300 / 08:01.750, 2Gb) Run Template (00:11.442 / 08:13.193, 2Gb) Generate HTML Outputs (00:02.880 / 08:16.074, 2Gb) Generate Spreadsheets (00:25.092 / 08:41.167, 1Gb) Generate Summaries (00:07.711 / 08:48.878, 2Gb) Generating Summary Outputs (00:00.000 / 08:48.878, 2Gb) DB Cumulative Time invested: 00:00:01.638 Sending Usage Stats to Server (00:22.330 / 09:11.209, 3Gb) ## Memory (MB): Use = 3343, Free = 15664, Total = 19008, Max = 19008 (00:00.009 / 09:11.219, 3Gb) Reclaiming memory... (00:00.000 / 09:11.219, 3Gb) ## Memory (MB): Use = 1586, Free = 17421, Total = 19008, Max = 19008 (00:01.856 / 09:13.077, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 09:13.078, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 09:13.078, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 09:13.079, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 09:13.079, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.730 / 09:13.809, 1Gb) Jekyll: Generating... (00:00.000 / 09:13.809, 1Gb) Jekyll: done in 7.264 seconds. (00:07.263 / 09:21.073, 1Gb) Checking Output HTML (00:04.541 / 09:25.615, 3Gb) found 1854 files (00:00.015 / 09:25.631, 3Gb) ........................................ ........................................ ... 1854 html files, 0 pages invalid xhtml (0%) (00:33.821 / 09:59.452, 6Gb) ... 350305 links, 0 broken links (0%) (00:00.000 / 09:59.452, 6Gb) Generate fragment-usage-analysis.csv (00:00.000 / 09:59.452, 6Gb) Build final .zip (00:00.007 / 09:59.460, 6Gb) Final .zip built (00:07.086 / 10:06.546, 6Gb) Built. Times: loading: 00:07.099, generate: 05:48.162, propagating status: 00:00.139, narrative generation: 00:07.025, realm-rules: 00:27.901, previous-version: 01:21.542, jekyll: 00:08.028, validation: 01:37.547 (#128), template: 00:02.892 (#3) (00:08.415 / 10:14.961, 7Gb) Generating QA (00:00.000 / 10:14.961, 7Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 4, Info: 87, Broken Links: 0 (00:00.633 / 10:15.595, 8Gb) Finished @ 7/24/25, 2:50 PM. Max Memory Used = 8Gb (00:00.063 / 10:15.659, 8Gb)