Validation Results for MinimalCommonOncologyDataElements

Generated Wed Oct 25 20:46:12 UTC 2023, FHIR version 4.0.1 for hl7.fhir.us.mcode#3.0.0 (canonical = http://hl7.org/fhir/us/mcode (history)). See Full QA Report

Quality Checks

Publisher Version: IG Publisher Version: v1.5.0

Publication Code: mcode . PackageId = hl7.fhir.us.mcode, Canonical = http://hl7.org/fhir/us/mcode

Realm Check for US:

Snomed: The IG specifies a different version (http://snomed.info/sct/900000000000207008/version/20230901) to the US edition of SNOMED CT version in the parameters (http://snomed.info/sct/731000124108)

25 Profiles not based on US Core

Publication Request:

package-id

hl7.fhir.us.mcode

version

3.0.0

path

http://hl7.org/fhir/us/mcode/STU3

Pub-Mode

milestone

status

trial-use

sequence

STU 3

desc

STU3 Release

descmd

STU3 Release

changes

change_log.html

Proposed path for this milestone publication should usually be canonical with either sequence or version appended

Supressed Messages: 66 Suppressed Issues

Dependency Checks:

Package	Version	FHIR	Canonical	Web Base	Comment
hl7.fhir.us.mcode	3.0.0	R4	http://hl7.org/fhir/us/mcode
hl7.terminology.r4	5.3.0 M	R4	http://terminology.hl7.org	http://terminology.hl7.org/5.3.0
hl7.fhir.us.core	5.0.1 O	R4	http://hl7.org/fhir/us/core	http://hl7.org/fhir/us/core/STU5.0.1	Latest Release is 6.1.0
hl7.terminology.r4	3.1.0 O	R4	http://terminology.hl7.org	http://terminology.hl7.org/3.1.0	Latest Release is 5.3.0
hl7.fhir.uv.bulkdata	2.0.0 M	R4	http://hl7.org/fhir/uv/bulkdata	http://hl7.org/fhir/uv/bulkdata/STU2
hl7.fhir.uv.smart-app-launch	2.0.0 O	R4	http://hl7.org/fhir/smart-app-launch	http://hl7.org/fhir/smart-app-launch/STU2	Latest Release is 2.1.0
us.nlm.vsac	0.7.0 O	R4	http://fhir.org/packages/us.nlm.vsac	http://fhir.org/packages/us.nlm.vsac	Latest Release is 0.13.0
hl7.fhir.uv.sdc	3.0.0 M	R4	http://hl7.org/fhir/uv/sdc	http://hl7.org/fhir/uv/sdc/STU3
hl7.fhir.r4.examples	4.0.1 O	R4	http://hl7.org/fhir	http://hl7.org/fhir/R4	Latest Release is 5.0.0
hl7.fhir.uv.genomics-reporting	2.0.0 M	R4	http://hl7.org/fhir/uv/genomics-reporting	http://hl7.org/fhir/uv/genomics-reporting/STU2
hl7.fhir.uv.extensions	5.1.0-cibuild V	R5	http://hl7.org/fhir/extensions	https://build.fhir.org/ig/HL7/fhir-extensions/	FHIR Version Mismatch
hl7.terminology.r5	5.3.0 M	R5	http://terminology.hl7.org	http://terminology.hl7.org/5.3.0	FHIR Version Mismatch

Templates: hl7.fhir.us.mcode.ig-template#0.1.0 -> hl7.fhir.template#current -> hl7.base.template#current -> fhir.base.template#current. Tools: current

Dependent IGs: 2 guides

Global Profiles: (none declared)

HTA Analysis: All OK

R5 Dependencies: (none)

Draft Dependencies:

hl7.fhir.r4.core#4.0.1: GuideParameterCode (15 uses), observation-bodyweight (3 uses), code (8 uses), observation-bodyheight (1 uses), Organization (39 uses), CommonLanguages (37 uses), CarePlan (30 uses), DeviceRequest (22 uses), ImmunizationRecommendation (24 uses), MedicationRequest (26 uses), NutritionOrder (23 uses), ServiceRequest (31 uses), MedicationAdministration (27 uses), MedicationDispense (22 uses), MedicationStatement (22 uses), Procedure (29 uses), Immunization (22 uses), ImagingStudy (47 uses), ObservationCategoryCodes (29 uses), LOINCCodes (71 uses), Encounter (30 uses), SNOMEDCTBodyStructures (26 uses), ObservationMethods (7 uses), Specimen (23 uses), Device (34 uses), DeviceMetric (24 uses), ObservationReferenceRangeMeaningCodes (24 uses), ObservationReferenceRangeAppliesToCodes (24 uses), QuestionnaireResponse (49 uses), MolecularSequence (49 uses), DocumentReference (26 uses), Media (25 uses), Practitioner (41 uses), PractitionerRole (41 uses), RelatedPerson (37 uses), MedicationAdministration Status Codes (1 uses), MedicationAdministration Category Codes (1 uses), Medication (3 uses), EpisodeOfCare (1 uses), MedicationAdministration Performer Function Codes (1 uses), SNOMEDCTAnatomicalStructureForAdministrationSiteCodes (2 uses), SNOMEDCTRouteCodes (2 uses), SNOMEDCTAdministrationMethodCodes (2 uses), Provenance (2 uses), medicationrequest Status (1 uses), medicationRequest Intent (1 uses), medicationRequest Category Codes (2 uses), RequestPriority (1 uses), CareTeam (26 uses), ProcedurePerformerRoleCodes (3 uses), medicationRequest Course of Therapy Codes (1 uses), Coverage (1 uses), ClaimResponse (1 uses), SNOMEDCTAdditionalDosageInstructions (1 uses), SNOMEDCTMedicationAsNeededReasonCodes (1 uses), DoseAndRateType (1 uses), DetectedIssue (1 uses), PlanDefinition (2 uses), ActivityDefinition (2 uses), Measure (2 uses), Questionnaire (2 uses), EventStatus (2 uses), ProcedureCategoryCodes(SNOMEDCT) (2 uses), Location (3 uses), ProcedureOutcomeCodes(SNOMEDCT) (2 uses), DiagnosticReport (3 uses), Composition (2 uses), Condition/Problem/DiagnosisCodes (2 uses), Condition (14 uses), ProcedureFollowUpCodes(SNOMEDCT) (2 uses), ProcedureDeviceActionCodes (2 uses), Substance (4 uses), FHIRDeviceTypes (2 uses), DiagnosticReportStatus (1 uses), DiagnosticServiceSectionCodes (2 uses), LOINCDiagnosticReportCodes (1 uses), SNOMEDCTClinicalFindings (1 uses), Group (3 uses), SpecimenStatus (1 uses), FHIRSpecimenCollectionMethod (1 uses), SpecimenProcessingProcedure (1 uses), SpecimenContainerType (1 uses), GroupType (1 uses), ConditionClinicalStatusCodes (2 uses), ConditionVerificationStatus (2 uses), ConditionCategoryCodes (4 uses), Condition/DiagnosisSeverity (2 uses), ConditionStage (2 uses), BodyStructure (2 uses), ClinicalImpression (1 uses), ConditionStageType (1 uses)
hl7.fhir.uv.extensions#5.1.0-cibuild: TypeMustSupport (34 uses)
hl7.fhir.uv.tools#1.0.0-candidate: ResourceSortExt (284 uses)
hl7.terminology.r5#5.3.0: ObservationCategoryCodes (85 uses), ConditionVerificationStatus (11 uses), ConditionCategoryCodes (11 uses), ProvenanceParticipantType (11 uses), MedicationRequestCategoryCodes (11 uses), ObservationReferenceRangeMeaningCodes (2 uses), OrganizationType (3 uses), UsageContextType (1 uses)

Modifier Extensions: (none)

Previous Version Comparison:

IPA Comparison: n/a

Summary: errors = 17, warn = 0, info = 0, broken links = 0

Filename	Errors	Warnings	Hints
Build Errors	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-gx-genomic-bundle-adam-anyperson	6	0	0
/scratch/repo/fsh-generated/resources/Bundle-mcode-patient-bundle-jenny-m	1	0	0
/scratch/repo/fsh-generated/resources/Observation-genomic-variant-fusion	1	0	0
/scratch/repo/fsh-generated/resources/Observation-genomic-variant-germline-deletion	1	0	0
/scratch/repo/fsh-generated/resources/Observation-genomic-variant-jenny-m	1	0	0
/scratch/repo/fsh-generated/resources/Observation-genomic-variant-somatic-single-nucleotide	1	0	0
/scratch/repo/fsh-generated/resources/Observation-gx-genomic-variant-somatic-bap1-indel	2	0	0
/scratch/repo/fsh-generated/resources/Observation-gx-genomic-variant-somatic-pof1b	2	0	0
/scratch/repo/fsh-generated/resources/Observation-gx-genomic-variant-somatic-polrmt	2	0	0

n/a Show Validation Information

fsh-generated/resources/Bundle-gx-genomic-bundle-adam-anyperson.json Show Validation Information (208)

Path

Severity

Message

Bundle.entry[6].resource/*Observation/gx-genomic-variant-somatic-bap1-indel*/.component[2].value.ofType(CodeableConcept) (l405/c14)

error

None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_004656.4:c.1768C>T)

Bundle.entry[6].resource/*Observation/gx-genomic-variant-somatic-bap1-indel*/.component[3].value.ofType(CodeableConcept) (l424/c14)

error

Bundle.entry[12].resource/*Observation/gx-genomic-variant-somatic-pof1b*/.component[4].value.ofType(CodeableConcept) (l1362/c14)

error

Bundle.entry[12].resource/*Observation/gx-genomic-variant-somatic-pof1b*/.component[5].value.ofType(CodeableConcept) (l1381/c14)

error

Bundle.entry[13].resource/*Observation/gx-genomic-variant-somatic-polrmt*/.component[4].value.ofType(CodeableConcept) (l1571/c14)

error

Bundle.entry[13].resource/*Observation/gx-genomic-variant-somatic-polrmt*/.component[5].value.ofType(CodeableConcept) (l1590/c14)

error

fsh-generated/resources/Bundle-mcode-patient-bundle-jenny-m.json Show Validation Information (110)

Path

Severity

Message

Bundle.entry[7].resource/*Observation/genomic-variant-jenny-m*/.component[2].value.ofType(CodeableConcept) (l761/c14)

error

fsh-generated/resources/Observation-genomic-variant-fusion.json Show Validation Information (1)

Path

Severity

Message

Observation.component[2].value.ofType(CodeableConcept) (l75/c8)

error

fsh-generated/resources/Observation-genomic-variant-germline-deletion.json Show Validation Information (1)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept) (l56/c8)

error

fsh-generated/resources/Observation-genomic-variant-jenny-m.json Show Validation Information (9)

Path

Severity

Message

Observation.component[2].value.ofType(CodeableConcept) (l76/c8)

error

fsh-generated/resources/Observation-genomic-variant-somatic-single-nucleotide.json Show Validation Information (9)

Path

Severity

Message

Observation.component[2].value.ofType(CodeableConcept) (l75/c8)

error

fsh-generated/resources/Observation-gx-genomic-variant-somatic-bap1-indel.json Show Validation Information (10)

Path

Severity

Message

Observation.component[2].value.ofType(CodeableConcept) (l80/c8)

error

Observation.component[3].value.ofType(CodeableConcept) (l99/c8)

error

fsh-generated/resources/Observation-gx-genomic-variant-somatic-pof1b.json Show Validation Information (10)

Path

Severity

Message

Observation.component[4].value.ofType(CodeableConcept) (l118/c8)

error

Observation.component[5].value.ofType(CodeableConcept) (l137/c8)

error

fsh-generated/resources/Observation-gx-genomic-variant-somatic-polrmt.json Show Validation Information (10)

Path

Severity

Message

Observation.component[4].value.ofType(CodeableConcept) (l113/c8)

error

Observation.component[5].value.ofType(CodeableConcept) (l132/c8)

error

Suppressed Messages (Warnings, hints, broken links)

DETAILS MESSAGES (THEY APPEAR TO BE FOR GROUPING PURPOSES ONLY)

Details for Observation/genomic-variant-jenny-m matching against profile http://hl7.org/fhir/StructureDefinition/Observation|4.0.1 (1 uses)
Details for Observation/gx-genomic-variant-somatic-bap1-indel matching against profile http://hl7.org/fhir/StructureDefinition/Observation|4.0.1 (2 uses)
Details for Observation/gx-genomic-variant-somatic-pof1b matching against profile http://hl7.org/fhir/StructureDefinition/Observation|4.0.1 (2 uses)
Details for Observation/gx-genomic-variant-somatic-polrmt matching against profile http://hl7.org/fhir/StructureDefinition/Observation|4.0.1 (2 uses)

IG Publisher Spurious Messages

VALUESET_CONCEPT_DISPLAY_SCT_TAG_MIXED (1 uses)

Reference to condition-category code system is inherited from US Core and we can't change that

Reference to draft item http://terminology.hl7.org/CodeSystem/condition-category|0.5.0 (11 uses)

Reference to deprecated extension included for backwards compatibility.

INFORMATION: StructureDefinition/mcode-radiotherapy-course-summary: Procedure.extension: The extension http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-treatment-termination-reason|3.0.0 is retired (1 uses)

Reference to work group extension value set containing "CIC" code

Reference to draft item http://hl7.org/fhir/hl7-work-group|5.1.0-cibuild (148 uses)
Reference to draft item http://hl7.org/fhir/standards-status|5.1.0-cibuild (7 uses)

SUPPRESS INFORMATION MESSAGES "DOES NOT MATCH ANY KNOWN SLICE" DUE TO TERMINOLOGY LIMITATIONS

INFORMATION: Bundle/gx-genomic-bundle-adam-anyperson: Bundle.entry[14].resource/*Observation/gx-genomic-diagnostic-implication-bap1*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication|2.0.0 (1 uses)
INFORMATION: Bundle/gx-genomic-bundle-adam-anyperson: Bundle.entry[15].resource/*Observation/gx-genomic-diagnostic-implication-pof1b*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication|2.0.0 (1 uses)
INFORMATION: Bundle/gx-genomic-bundle-adam-anyperson: Bundle.entry[16].resource/*Observation/gx-genomic-diagnostic-implication-polrmt*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication|2.0.0 (1 uses)
INFORMATION: Bundle/gx-genomic-bundle-adam-anyperson: Bundle.entry[1].resource/*DiagnosticReport/gx-genomics-report-adam-anyperson*/.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: Bundle/gx-genomic-bundle-adam-anyperson: Bundle.entry[1].resource/*DiagnosticReport/gx-genomics-report-adam-anyperson*/.result[13]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: Bundle/gx-genomic-bundle-adam-anyperson: Bundle.entry[1].resource/*DiagnosticReport/gx-genomics-report-adam-anyperson*/.result[14]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: Bundle/gx-genomic-bundle-adam-anyperson: Bundle.entry[1].resource/*DiagnosticReport/gx-genomics-report-adam-anyperson*/.result[6]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: Bundle/gx-genomic-bundle-adam-anyperson: Bundle.entry[1].resource/*DiagnosticReport/gx-genomics-report-adam-anyperson*/.result[7]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: Bundle/mcode-patient-bundle-jenny-m: Bundle.entry[27]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-patient-bundle|3.0.0 (1 uses)
INFORMATION: Bundle/mcode-patient-bundle-jenny-m: Bundle.entry[30]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-patient-bundle|3.0.0 (1 uses)
INFORMATION: Bundle/mcode-patient-bundle-jenny-m: Bundle.entry[38]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-patient-bundle|3.0.0 (1 uses)
INFORMATION: Bundle/mcode-patient-bundle-jenny-m: Bundle.entry[39]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-patient-bundle|3.0.0 (1 uses)
INFORMATION: Bundle/mcode-patient-bundle-jenny-m: Bundle.entry[8].resource/*DiagnosticReport/genomics-report-jenny-m*/.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: DiagnosticReport/genomics-report-jenny-m: DiagnosticReport.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: DiagnosticReport/genomics-report-john-anyperson: DiagnosticReport.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: DiagnosticReport/gx-genomics-report-adam-anyperson: DiagnosticReport.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: DiagnosticReport/gx-genomics-report-adam-anyperson: DiagnosticReport.result[13]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: DiagnosticReport/gx-genomics-report-adam-anyperson: DiagnosticReport.result[14]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: DiagnosticReport/gx-genomics-report-adam-anyperson: DiagnosticReport.result[6]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: DiagnosticReport/gx-genomics-report-adam-anyperson: DiagnosticReport.result[7]: This element does not match any known slice defined in the profile http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report|3.0.0 (1 uses)
INFORMATION: Observation/gx-genomic-diagnostic-implication-bap1: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication|2.0.0 (1 uses)
INFORMATION: Observation/gx-genomic-diagnostic-implication-pof1b: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication|2.0.0 (1 uses)
INFORMATION: Observation/gx-genomic-diagnostic-implication-polrmt: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication|2.0.0 (1 uses)

SUPPRESS US CORE COMPLIANCE WARNINGS. For STU2, exceptions to US Core parent profiles was approved by Cross-Group Projects Work Group on 1/28/2021 Floyd Eisenberg/Brett Marquard: 28-0-1. See https://jira.hl7.org/browse/FHIR-30707. For STU3, exceptions to US Core parent profiles was approved by the Cross-Group Projects Work Group on 2/9/2023 Saul Kravitz/Floyd Eisenberg: 23-0-2. See https://jira.hl7.org/browse/FHIR-40383. A variance for an additional Observation added in STU3 was approved by the Cross-Group Projects Work Group on 8/10/23. See https://jira.hl7.org/browse/FHIR-41710.

US FHIR Usage rules require that all profiles on DiagnosticReport derive from one of the base US profiles (1 uses)
US FHIR Usage rules require that all profiles on Observation derive from one of the base US profiles (23 uses)
US FHIR Usage rules require that all profiles on Specimen derive from the core US profile (1 uses)

TG263 is a proprietary codesystem used in Radiotherapy. The whole point of conceptmaps is to make it easy to transition to the ValueSets used in this IG. The codesystem identifers TRX, IJE and MRE are not proper codesystem URIs. Work is underway to define proper URIs that will be included in future versions of this IG.

INFORMATION: ConceptMap/TG263CM: ConceptMap: The concept map has too many codes to validate (673) (1 uses)
WARNING: ConceptMap/TG263CM: ConceptMap.group[0].source: The Source Code System TG263 is not fully defined and populated, and no sourceScope is specified, so the source code checking will not be performed (1 uses)

This is a publisher induced issue. The extension in question is introduced by the publisher, not sushi. See https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/New.20ConceptMap.20Warning.20--.20induced.20by.20IG.20Publisher

The modifier extension http://hl7.org/fhir/1.0/StructureDefinition/extension-ConceptMap.element.target.equivalence from FHIR version {3} is not allowed to be used at this point (allowed = e:ConceptMap.element.target; this element is [[BackboneElement, ConceptMap.group.element.target]; this is a warning since contexts may be renamed between FHIR versions) (673 uses)

UNSUPPORTED TERMINOLOGY

Code System URI 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' is unknown so the code cannot be validated (9 uses)
Code System URI 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' is unknown so the code cannot be validated; Unable to check whether the code is in the value set http://hl7.org/fhir/us/mcode/ValueSet/mcode-cancer-stage-type-vs|3.0.0 (2 uses)
Code System URI 'http://www.ncbi.nlm.nih.gov/gtr' is unknown so the code cannot be validated (2 uses)
Code System URI 'http://www.sequenceontology.org/' is unknown so the code cannot be validated (20 uses)
Code System URI 'https://www.gensop.com' is unknown so the code cannot be validated (2 uses)
Code System URI 'https://www.ncbi.nlm.nih.gov/gene' is unknown so the code cannot be validated (20 uses)
Error from http://tx.fhir.org/r4: HGVS is not supported at this time (17 uses)
Error from http://tx.fhir.org/r4: Unable to provide support for code system http://cancerstaging.org (4 uses)
Error from http://tx.fhir.org/r4: Unable to provide support for code system http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl (10 uses)
Error from http://tx.fhir.org/r4: Unable to provide support for code system http://terminology.hl7.org/CodeSystem/icd-o-3 (2 uses)
Error from server: HGVS is not supported at this time (0 uses)
Error from server: Unable to provide support for code system http://cancerstaging.org (0 uses)
Error from server: Unable to provide support for code system http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl (0 uses)
Error from server: Unable to provide support for code system http://terminology.hl7.org/CodeSystem/icd-o-3 (0 uses)
Error from server: Unable to provide support for code system http://www.ama-assn.org/go/cpt (0 uses)
HGVS is not supported at this time (0 uses)
The definition for the Code System with URI 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' doesnt provide any codes so the code cannot be validated (21 uses)
The definition for the Code System with URI 'http://terminology.hl7.org/CodeSystem/icd-o-3' doesnt provide any codes so the code cannot be validated (2 uses)
The definition for the Code System with URI 'http://www.genenames.org' doesnt provide any codes so the code cannot be validated (45 uses)
The definition for the Code System with URI 'http://www.ncbi.nlm.nih.gov/clinvar' doesnt provide any codes so the code cannot be validated (3 uses)
The definition for the Code System with URI 'http://www.ncbi.nlm.nih.gov/refseq' doesnt provide any codes so the code cannot be validated (6 uses)
The definition for the Code System with URI 'urn:oid:2.16.840.1.113883.6.238' doesnt provide any codes so the code cannot be validated (10 uses)
Unable to check whether the code is in the value set http://hl7.org/fhir/us/mcode/ValueSet/mcode-cancer-stage-type-vs|3.0.0 (2 uses)
Unable to expand imported value set http://hl7.org/fhir/us/mcode/ValueSet/mcode-primary-cancer-disorder-vs: Unable to expand imported value set http://hl7.org/fhir/us/mcode/ValueSet/mcode-primary-malignant-neoplasm-disorder-vs: The value set http://hl7.org/fhir/us/mcode/ValueSet/mcode-primary-malignant-neoplasm-disorder-vs has too many codes to display (>1000) (and Error from http://tx.fhir.org/r4: Unable to provide support for code system http://terminology.hl7.org/CodeSystem/icd-o-3) (1 uses)
Unknown System 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' specified, so Concepts and Filters can't be checked (Details: Resolved system http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl (v3.0.0), but the definition is not complete) (10 uses)

Use of UCUM inherited from Genomics IG (nothing we can do about it)

UCUM Codes that contain human readable annotations like {Base} can be misleading (e.g. they are ignored when comparing units). Best Practice is not to depend on annotations in the UCUM code, so this usage should be checked, and the Quantity.unit SHOULD contain the annotation (1 uses)
WARNING: Observation/gx-genomic-tmb: Observation.value.ofType(Quantity): UCUM Codes that contain human readable annotations like {Base} can be misleading (e.g. they are ignored when comparing units). Best Practice is not to depend on annotations in the UCUM code, so this usage should be checked, and the Quantity.unit SHOULD contain the annotation (1 uses)

Value Set Too Large to Validate

The value set include has too many codes to validate (1,045) (1 uses)

Errors sorted by type

Terminology_TX_NoValid_1_CC

fsh-generated/resources/Bundle-gx-genomic-bundle-adam-anyperson.json

fsh-generated/resources/Bundle-mcode-patient-bundle-jenny-m.json

fsh-generated/resources/Observation-genomic-variant-fusion.json

fsh-generated/resources/Observation-genomic-variant-germline-deletion.json

fsh-generated/resources/Observation-genomic-variant-jenny-m.json

fsh-generated/resources/Observation-genomic-variant-somatic-single-nucleotide.json

fsh-generated/resources/Observation-gx-genomic-variant-somatic-bap1-indel.json

fsh-generated/resources/Observation-gx-genomic-variant-somatic-pof1b.json

fsh-generated/resources/Observation-gx-genomic-variant-somatic-polrmt.json