INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-icsr-ae-reporting --branch main repo DEBUG:root:Time to deadline 35879.998356 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.58257 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.465599 seconds added 114 packages in 21s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New minor version of npm available! 9.5.1 -> 9.8.1 npm notice Changelog: npm notice Run `npm install -g npm@9.8.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-icsr-ae-reporting/ -out /scratch/ig-build-temp-KP6RF8/repo DEBUG:root:Time to deadline 35857.353089 seconds FHIR IG Publisher Version 1.4.1 (Git# a563eff37178). Built 2023-08-29T10:20:40.367Z (30 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/ig-build-temp-KP6RF8/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-icsr-ae-reporting/ -out /scratch/ig-build-temp-KP6RF8/repo Start Clock @ Wednesday, August 30, 2023, 5:00:32 PM Coordinated Universal Time (2023-08-30T17:00:32Z) Build FHIR IG from /scratch/ig-build-temp-KP6RF8/repo (00:00.048) API keys loaded from /etc/fhir-settings.json (00:00.049) Package Cache: /scratch/ig-build-temp-KP6RF8/repo/var/lib/.fhir/packages (00:00.052) Run Sushi on /scratch/ig-build-temp-KP6RF8/repo (00:00.058) Sushi: info Running SUSHI v3.3.2 (implements FHIR Shorthand specification v3.0.0-ballot) (00:00.836) Sushi: info Arguments: (00:00.836) Sushi: info --require-latest (00:00.836) Sushi: info --out /scratch/ig-build-temp-KP6RF8/repo (00:00.836) Sushi: info /scratch/ig-build-temp-KP6RF8/repo (00:00.837) Sushi: info Using configuration file: /scratch/ig-build-temp-KP6RF8/repo/sushi-config.yaml (00:01.848) Sushi: info Importing FSH text... (00:01.972) Sushi: info Preprocessed 16 documents with 49 aliases. (00:02.128) Sushi: info Imported 57 definitions and 42 instances. (00:02.164) Sushi: info Checking /root/.fhir/packages for hl7.fhir.uv.tools#current... (00:02.166) Sushi: info Did not find hl7.fhir.uv.tools#current in /root/.fhir/packages. (00:02.167) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:02.294) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:02.308) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:02.492) Sushi: info Checking /root/.fhir/packages for hl7.terminology.r4#5.0.0... (00:03.024) Sushi: info Did not find hl7.terminology.r4#5.0.0 in /root/.fhir/packages. (00:03.038) Sushi: info Downloading hl7.terminology.r4#5.0.0... https://packages.fhir.org/hl7.terminology.r4/5.0.0 (00:03.039) Sushi: info Downloaded hl7.terminology.r4#5.0.0 (00:05.035) Sushi: info Loaded package hl7.terminology.r4#5.0.0 (00:06.358) Sushi: info Checking /root/.fhir/packages for hl7.fhir.us.core#4.0.0... (00:06.358) Sushi: info Did not find hl7.fhir.us.core#4.0.0 in /root/.fhir/packages. (00:06.671) Sushi: info Downloading hl7.fhir.us.core#4.0.0... https://packages.fhir.org/hl7.fhir.us.core/4.0.0 (00:06.672) Sushi: info Downloaded hl7.fhir.us.core#4.0.0 (00:07.899) Sushi: info Loaded package hl7.fhir.us.core#4.0.0 (00:08.347) Sushi: info Checking /root/.fhir/packages for hl7.fhir.us.medmorph#0.1.0... (00:08.347) Sushi: info Did not find hl7.fhir.us.medmorph#0.1.0 in /root/.fhir/packages. (00:08.735) Sushi: info Downloading hl7.fhir.us.medmorph#0.1.0... https://packages.fhir.org/hl7.fhir.us.medmorph/0.1.0 (00:08.736) Sushi: info Downloaded hl7.fhir.us.medmorph#0.1.0 (00:09.557) Sushi: info Loaded package hl7.fhir.us.medmorph#0.1.0 (00:10.180) Sushi: info Checking /root/.fhir/packages for us.nlm.vsac#0.9.0... (00:10.180) Sushi: info Did not find us.nlm.vsac#0.9.0 in /root/.fhir/packages. (00:10.576) Sushi: info Downloading us.nlm.vsac#0.9.0... https://packages.fhir.org/us.nlm.vsac/0.9.0 (00:10.576) Sushi: info Downloaded us.nlm.vsac#0.9.0 (00:13.042) Sushi: info Loaded package us.nlm.vsac#0.9.0 (00:19.179) Sushi: info Checking /root/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:19.180) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /root/.fhir/packages. (00:22.573) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:22.573) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:25.123) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:30.175) Sushi: info Converting FSH to FHIR resources... (00:30.224) Sushi: info Converted 42 FHIR StructureDefinitions. (00:31.903) Sushi: info Converted 2 FHIR CodeSystems. (00:31.933) Sushi: info Converted 13 FHIR ValueSets. (00:32.203) Sushi: info Converted 42 FHIR instances. (00:35.091) Sushi: info Exporting FHIR resources as JSON... (00:35.091) Sushi: info Exported 99 FHIR resources as JSON. (00:35.218) Sushi: info Assembling Implementation Guide sources... (00:35.218) Sushi: info Generated ImplementationGuide-hl7.fhir.us.icsr-ae-reporting.json (00:35.241) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:35.242) Sushi: ========================= SUSHI RESULTS =========================== (00:35.243) Sushi: | ------------------------------------------------------------- | (00:35.243) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:35.243) Sushi: | |-------------------------------------------------------------| | (00:35.243) Sushi: | | 22 | 20 | 0 | 0 | | (00:35.243) Sushi: | ------------------------------------------------------------- | (00:35.243) Sushi: | ------------------------------------------------------------- | (00:35.243) Sushi: | | ValueSets | CodeSystems | Instances | | (00:35.243) Sushi: | |-------------------------------------------------------------| | (00:35.243) Sushi: | | 13 | 2 | 42 | | (00:35.243) Sushi: | ------------------------------------------------------------- | (00:35.244) Sushi: | | (00:35.244) Sushi: =================================================================== (00:35.244) Sushi: | Valedictorian of the School of FSH! 0 Errors 0 Warnings | (00:35.244) Sushi: =================================================================== (00:35.244) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:35.863) Load Template from hl7.fhir.template#current (00:36.388) Installing hl7.fhir.template#current to the package cache Fetching: Installing hl7.fhir.template#current done. Load Template from hl7.base.template#current (00:36.887) Installing hl7.base.template#current to the package cache Fetching: Installing hl7.base.template#current done. Load Template from fhir.base.template#current (00:36.915) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onLoad-ig-working.xml to /scratch/ig-build-temp-KP6RF8/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/ig-build-temp-KP6RF8/repo (00:39.300) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.core#4.0.1 done. Terminology Cache is at /scratch/ig-build-temp-KP6RF8/repo/input-cache/txcache. Trimming now (00:50.364) Connect to Terminology Server at http://tx.fhir.org (00:50.365) Installing hl7.fhir.pubpack#0.1.5 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.5 done. Load Package hl7.fhir.pubpack#0.1.5 Installing hl7.fhir.xver-extensions#0.0.12 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.0.12 done. Load Package hl7.fhir.xver-extensions#0.0.12 Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: Installing hl7.terminology.r4#5.0.0 done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#1.0.0 done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.us.core#4.0.0 to the package cache Fetching: Installing hl7.fhir.us.core#4.0.0 done. Installing hl7.fhir.uv.bulkdata#1.0.1 to the package cache Fetching: Installing hl7.fhir.uv.bulkdata#1.0.1 done. Load Package hl7.fhir.uv.bulkdata#1.0.1 Installing us.nlm.vsac#0.3.0 to the package cache Fetching: Installing us.nlm.vsac#0.3.0 done. Load Package us.nlm.vsac#0.3.0 Load Package hl7.fhir.us.core#4.0.0 Installing hl7.fhir.us.medmorph#0.1.0 to the package cache Fetching: Installing hl7.fhir.us.medmorph#0.1.0 done. Installing hl7.fhir.us.core#3.1.0 to the package cache Fetching: Installing hl7.fhir.us.core#3.1.0 done. Load Package hl7.fhir.us.core#3.1.0 Load Package hl7.fhir.us.medmorph#0.1.0 Installing us.nlm.vsac#0.9.0 to the package cache Fetching: Installing us.nlm.vsac#0.9.0 done. Load Package us.nlm.vsac#0.9.0 Installing hl7.fhir.uv.tools#current to the package cache Fetching: Installing hl7.fhir.uv.tools#current done. Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.tools' is from version 5.0.0 (will try to run anyway) (01:39.896) Load Package hl7.fhir.uv.tools#current Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (01:47.327) Fetch http://hl7.org/fhir/us/icsr-ae-reporting/package-list.json for version check (01:47.329) Load Content (01:47.426) loadPrePages from FetchedFile[/scratch/ig-build-temp-KP6RF8/repo/fsh-generated/includes] as /scratch/ig-build-temp-KP6RF8/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/ig-build-temp-KP6RF8/repo/input/pagecontent] as /scratch/ig-build-temp-KP6RF8/repo/input/pagecontent Processing Conformance Resources (02:11.586) Generating Snapshots (02:25.724) Propagating status (03:44.697) Generating Narratives (03:44.697) add to cache: http://terminology.hl7.org/CodeSystem/adverse-event-seriousness|0.1.0 Validating Conformance Resources (05:06.558) Installing hl7.fhir.us.core#6.1.0 to the package cache Fetching: Installing hl7.fhir.us.core#6.1.0 done. US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/head-occipital-frontal-circumference-percentile|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/pediatric-bmi-for-age|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/pediatric-weight-for-height|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-blood-pressure|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-bmi|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-height|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-temperature|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-weight|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-head-circumference|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-heart-rate|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-clinical-result|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-occupation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-pregnancyintent|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-pregnancystatus|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-screening-assessment|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-sexual-orientation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-pulse-oximetry|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-respiratory-rate|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-simple-observation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-smokingstatus|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-exposurecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-vital-signs|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/head-occipital-frontal-circumference-percentile|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/pediatric-bmi-for-age|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/pediatric-weight-for-height|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-blood-pressure|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-bmi|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-height|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-temperature|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-weight|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-head-circumference|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-heart-rate|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-clinical-result|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-occupation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-pregnancyintent|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-pregnancystatus|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-screening-assessment|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-sexual-orientation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-pulse-oximetry|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-respiratory-rate|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-simple-observation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-smokingstatus|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-aecountobservation|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-vital-signs|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/head-occipital-frontal-circumference-percentile|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/pediatric-bmi-for-age|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/pediatric-weight-for-height|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-blood-pressure|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-bmi|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-height|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-temperature|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-body-weight|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-head-circumference|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-heart-rate|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-clinical-result|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-occupation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-pregnancyintent|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-pregnancystatus|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-screening-assessment|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-sexual-orientation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-pulse-oximetry|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-respiratory-rate|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-simple-observation|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-smokingstatus|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-patientagegroup|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-vital-signs|6.1.0] US Core Comparison: compare StructureDefinition[http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-authorrelatedperson|1.0.1] to StructureDefinition[http://hl7.org/fhir/us/core/StructureDefinition/us-core-relatedperson|6.1.0] US Core Comparisons Finished Validating Resources (05:58.063) add to cache: http://hl7.org/fhir/ValueSet/observation-vitalsignresult|4.0.1 already cached: http://hl7.org/fhir/ValueSet/observation-vitalsignresult|4.0.1 Processing Provenance Records (06:02.763) Generating Outputs in /scratch/ig-build-temp-KP6RF8/repo/output (06:02.763) Generate Native Outputs (06:04.088) Run Template (06:13.259) onGenerate.checkVersions: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-KP6RF8/repo/template/versions.txt [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-KP6RF8/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-KP6RF8/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 17 files to /scratch/ig-build-temp-KP6RF8/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-working.1.xml to /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-working.2.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.groupSort.xslt [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-working.2.xml to /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-KP6RF8/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-KP6RF8/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-KP6RF8/repo/template/properties.txt [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-icsr-ae-reporting.xml [get] To: /scratch/ig-build-temp-KP6RF8/repo/input-cache/jiraspec.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-icsr-ae-reporting.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/FHIR-us-icsr-ae-reporting.xml onGenerate.jira.packagelistcopy: onGenerate.jira.packagelistget: [get] Getting: http://hl7.org/fhir/us/icsr-ae-reporting/package-list.json [get] To: /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.workingpackage-list.json onGenerate.jira.packagelistProcess: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.package-list.tmp.xml to /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.package-list.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.package-list.xslt onGenerate.jira.packagelistSkip: onGenerate.jira.pubrequestProcess: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.pubrequest.tmp.xml to /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.pubrequest.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.pubrequest.xslt onGenerate.jira.pubrequestSkip: onGenerate.jira.generate: [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.tmp.xml to /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.tmp2.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.process-pkg-list.xslt [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.tmp2.xml to /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.jira.xslt [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/template/onGenerate.jira.xml to /scratch/ig-build-temp-KP6RF8/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/ig-build-temp-KP6RF8/repo/input-cache/jiraspec.xml to /scratch/ig-build-temp-KP6RF8/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/ig-build-temp-KP6RF8/repo/template/scripts/onGenerate.normalize.xslt [copy] Copying 1 file to /scratch/ig-build-temp-KP6RF8/repo onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (06:15.129) Generate HTML Outputs (06:15.130) add to cache: http://hl7.org/fhir/us/icsr-ae-reporting/ValueSet/COVID19VaccineCodeVS|1.0.1 add to cache: http://hl7.org/fhir/us/icsr-ae-reporting/ValueSet/InfluenzaVaccineCodeVS|1.0.1 ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... Value set 'https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1234.74/definition' at http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-transfusion#Procedure.code not found Value set 'https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1234.74/definition' at http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-transfusion#Procedure.code not found Value set 'https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1234.74/definition' at http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-transfusion#Procedure.code not found Value set 'https://vsac.nlm.nih.gov/valueset/2.16.840.1.113762.1.4.1234.74/definition' at http://hl7.org/fhir/us/icsr-ae-reporting/StructureDefinition/icsr-transfusion#Procedure.code not found Generate Summaries (07:37.913) Generating Summary Outputs (07:37.914) Sending Usage Stats to Server (09:56.041) ## Memory (MB): Use = 5599, Free = 13408, Total = 19008, Max = 19008 Reclaiming memory... ## Memory (MB): Use = 3340, Free = 15667, Total = 19008, Max = 19008 Run jekyll: jekyll build --destination "/scratch/ig-build-temp-KP6RF8/repo/output" (in folder /scratch/ig-build-temp-KP6RF8/repo/temp/pages) (09:57.270) Jekyll: Source: /scratch/ig-build-temp-KP6RF8/repo/temp/pages (09:57.615) Jekyll: Generating... (09:57.615) Jekyll: done in 2.61 seconds. (10:00.224) Checking Output HTML (10:03.464) found 1669 files (10:03.471) ........................................ ........................................ ... 1669 html files, 0 pages invalid xhtml (0%) (10:30.875) ... 366637 links, 0 broken links (0%) (10:30.875) Build final .zip (10:30.876) Final .zip built (10:33.627) Built. Times: loading: 00:24.160, generate: 08:28.551, narrative generation: 01:21.860, realm-rules: 00:04.588, previous-version: 00:00.000, jekyll: 00:02.970, validation: 00:51.265 (#100), template: 00:01.870 (#3) (10:40.190) Validation output in /scratch/ig-build-temp-KP6RF8/repo/output/qa.html Errors: 11, Warnings: 4, Info: 6, Broken Links: 0 (10:40.986) Finished (10:41.000)