INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-ichom-breast-cancer-ig --branch main repo DEBUG:root:Time to deadline 35879.998111 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.632064 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.21243 seconds /usr/local/bin/sushi -> /usr/local/lib/node_modules/fsh-sushi/dist/app.js npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@2.3.2 (node_modules/fsh-sushi/node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@2.3.2: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) + fsh-sushi@2.3.0 added 932 packages from 487 contributors in 10.027s DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org/r4 -target https://build.fhir.org/ig/HL7/fhir-ichom-breast-cancer-ig/ -out /scratch/ig-build-temp-JENAER/repo DEBUG:root:Time to deadline 35866.821224 seconds FHIR IG Publisher Version 1.1.113 (Git# 36472c045b0c). Built 2022-03-18T05:50:01.31Z (10 days old) Detected Java version: 11.0.9 from /usr/local/openjdk-11 on Linux/amd64 (64bit). 18366MB available dir = /scratch/ig-build-temp-JENAER/repo, path = /usr/local/rvm/bin:/usr/local/rvm/rubies/ruby-2.5.1/bin:/usr/local/openjdk-11/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org/r4 -target https://build.fhir.org/ig/HL7/fhir-ichom-breast-cancer-ig/ -out /scratch/ig-build-temp-JENAER/repo Start Clock @ Monday, March 28, 2022 at 1:44:15 PM Coordinated Universal Time (2022-03-28T13:44:15Z) API keys loaded from /etc/ig.builder.keyfile.ini (00:00.0004) Package Cache: var/lib/.fhir/packages (00:00.0006) Run Sushi on /scratch/ig-build-temp-JENAER/repo (00:00.0006) Sushi: info Running SUSHI v2.3.0 (implements FHIR Shorthand specification v1.2.0) (00:00.0352) Sushi: info Arguments: (00:00.0352) Sushi: info --out /scratch/ig-build-temp-JENAER/repo (00:00.0352) Sushi: info /scratch/ig-build-temp-JENAER/repo (00:00.0352) Sushi: info Using configuration file: /scratch/ig-build-temp-JENAER/repo/sushi-config.yaml (00:00.0354) Sushi: info Importing FSH text... (00:00.0361) Sushi: info Preprocessed 20 documents with 3 aliases. (00:00.0625) Sushi: info Imported 80 definitions and 15 instances. (00:00.0678) Sushi: info Checking local cache for hl7.fhir.r4.core#4.0.1... (00:00.0679) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in local cache. (00:00.0679) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... (00:00.0679) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.0284) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:04.0489) Sushi: info Converting FSH to FHIR resources... (00:04.0542) Sushi: info Converted 38 FHIR CodeSystems. (00:04.0702) Sushi: info Converted 42 FHIR ValueSets. (00:04.0860) Sushi: info Converted 15 FHIR instances. (00:07.0053) Sushi: info Exporting FHIR resources as JSON... (00:07.0054) Sushi: info Exported 95 FHIR resources as JSON. (00:07.0080) Sushi: info Assembling Implementation Guide sources... (00:07.0081) Sushi: info Generated ImplementationGuide-hl7.fhir.uv.ichom.breastcancer.json (00:07.0085) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:07.0085) Sushi: (00:07.0085) Sushi: ========================= SUSHI RESULTS =========================== (00:07.0086) Sushi: | ------------------------------------------------------------- | (00:07.0086) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:07.0087) Sushi: | |-------------------------------------------------------------| | (00:07.0087) Sushi: | | 0 | 0 | 0 | 0 | | (00:07.0087) Sushi: | ------------------------------------------------------------- | (00:07.0087) Sushi: | ------------------------------------------------------------- | (00:07.0087) Sushi: | | ValueSets | CodeSystems | Instances | | (00:07.0088) Sushi: | |-------------------------------------------------------------| | (00:07.0088) Sushi: | | 42 | 38 | 15 | | (00:07.0088) Sushi: | ------------------------------------------------------------- | (00:07.0088) Sushi: | | (00:07.0088) Sushi: =================================================================== (00:07.0089) Sushi: | Fin-tastic job! 0 Errors 0 Warnings | (00:07.0089) Sushi: =================================================================== (00:07.0089) Load Template from hl7.fhir.template#current (00:07.0719) Installing hl7.fhir.template#current to the package cache Fetching: Installing: done. Load Template from hl7.base.template#current (00:08.0150) Installing hl7.base.template#current to the package cache Fetching: Installing: done. Load Template from fhir.base.template#current (00:08.0164) Installing fhir.base.template#current to the package cache Fetching:. Installing: . done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onLoad-ig-working.xml to /scratch/ig-build-temp-JENAER/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/ig-build-temp-JENAER/repo (00:10.0554) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching:.................................................................................................... Installing: .................................................................................................... done. Terminology Cache is at /scratch/ig-build-temp-JENAER/repo/input-cache/txcache. Trimming now (00:20.0700) Connect to Terminology Server at http://tx.fhir.org/r4 (00:20.0702) Installing hl7.fhir.pubpack#0.0.9 to the package cache Fetching:......... Installing: ......... done. Load Package hl7.fhir.pubpack#0.0.9 Installing hl7.fhir.xver-extensions#0.0.11 to the package cache Fetching: Installing: done. Load Package hl7.fhir.xver-extensions#0.0.11 Installing hl7.terminology.r4#3.1.0 to the package cache Fetching:................................................................................... Installing: ................................................................................... done. Load Package hl7.terminology.r4#3.1.0 Initialization complete (00:27.0116) Fetch https://connect.ichom.org/fhir/package-list.json for version check (00:27.0117) Load Content (00:27.0524) loadPrePages from FetchedFile[/scratch/ig-build-temp-JENAER/repo/fsh-generated/includes] as /scratch/ig-build-temp-JENAER/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/ig-build-temp-JENAER/repo/input/pagecontent] as /scratch/ig-build-temp-JENAER/repo/input/pagecontent Processing Conformance Resources (00:27.0806) Generating Snapshots (00:28.0048) Propagating status (00:28.0048) Generating Narratives (00:28.0048) Validating Conformance Resources (00:32.0496) Validating Resources (00:34.0424) Processing Provenance Records (00:34.0611) Generating Outputs in /scratch/ig-build-temp-JENAER/repo/output (00:34.0611) onGenerate.checkVersions: [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-JENAER/repo/template/versions.txt [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-JENAER/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-JENAER/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 17 files to /scratch/ig-build-temp-JENAER/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-working.1.xml to /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-JENAER/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-JENAER/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/ig-build-temp-JENAER/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-JENAER/repo/template/properties.txt [xslt] Loading stylesheet /scratch/ig-build-temp-JENAER/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-ichom.breastcancer.xml [get] To: /scratch/ig-build-temp-JENAER/repo/input-cache/jiraspec.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-ichom.breastcancer.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-ichom.breastcancer.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-ichom.breastcancer.xml [get] Can't get https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-ichom.breastcancer.xml to /scratch/ig-build-temp-JENAER/repo/input-cache/jiraspec.xml onGenerate.jira.generate: onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Generating Summary Outputs (00:41.0564) Sending Usage Stats to Server (00:41.0993) ## Memory (MB): Use = 2093, Free = 16252, Total = 18366, Max =18366 Reclaiming memory... ## Memory (MB): Use = 461, Free = 17905, Total = 18366, Max =18366 Run jekyll: jekyll build --destination "/scratch/ig-build-temp-JENAER/repo/output" (in folder /scratch/ig-build-temp-JENAER/repo/temp/pages) (00:42.0789) Jekyll: Source: /scratch/ig-build-temp-JENAER/repo/temp/pages (00:43.0127) Jekyll: Generating... (00:43.0127) Jekyll: done in 1.252 seconds. (00:44.0380) Checking Output HTML (00:44.0782) found 1335 files (00:44.0787) ........................................ ........................................ ... 1335 html files, 0 pages invalid xhtml (0%) (00:49.0065) ... 69648 links, 0 broken links (0%) (00:49.0065) Build final .zip (00:49.0065) Final .zip built (00:49.0638) Built. Times: loading: 00:00.0280, generate: 00:22.0112, narrative generation: 00:04.0447, realm-rules: 00:00.0000, previous-version: 00:00.0000, jekyll: 00:01.0604, validation: 00:02.0100 (#96), template: 00:02.0082 (#3) (00:49.0927) Validation output in /scratch/ig-build-temp-JENAER/repo/output/qa.html Errors: 1, Warnings: 0, Info: 0, Broken Links = 0 (00:50.0382) Finished (00:50.0382) Done (00:50.0382)