COVID-19 FHIR Profile Library IG Informative Version, published by HL7 International - Clinical Information Modeling Initiative. This is not an authorized publication; it is the continuous build for version 1.0.0). This version is based on the current content of https://github.com/HL7/fhir-COVID19Library-ig/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: SARScoronavirus2sequencingidentificationpanelPtXXXMolgenExample - TTL Representation

Raw ttl | Download

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "SARScoronavirus2sequencingidentificationpanelPtXXXMolgenExample"];
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://hl7.org/fhir/us/covid19library/StructureDefinition/SARScoronavirus2sequencingidentificationpanelPtXXXMolgen";
       fhir:index 0;
       fhir:link <http://hl7.org/fhir/us/covid19library/StructureDefinition/SARScoronavirus2sequencingidentificationpanelPtXXXMolgen>     ]
  ];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource \"SARScoronavirus2sequencingidentificationpanelPtXXXMolgenExample\" </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-SARScoronavirus2sequencingidentificationpanelPtXXXMolgen.html\">SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span></p><p><b>code</b>: SARS-CoV-2 (COVID-19) sequencing and identification panel - Specimen by Molecular genetics method <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#96894-1)</span></p><p><b>subject</b>: <a href=\"Patient-patient-anyperson-mary.html\">Patient/patient-anyperson-mary</a> \" ANYPERSON\"</p><p><b>effective</b>: 2021-09-21</p><p><b>dataAbsentReason</b>: Not Permitted <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/3.1.0/CodeSystem-data-absent-reason.html\">DataAbsentReason</a>#not-permitted)</span></p><p><b>hasMember</b>: </p><ul><li><a href=\"Observation-SequencingStudyIdentifierExample.html\">Observation/SequencingStudyIdentifierExample</a></li><li><a href=\"Observation-GISAIDSequenceAccessionNumberExample.html\">Observation/GISAIDSequenceAccessionNumberExample</a></li><li><a href=\"Observation-SARSCoV2wholegenomeSeqPtIsolateNomSequencingExample.html\">Observation/SARSCoV2wholegenomeSeqPtIsolateNomSequencingExample</a></li><li><a href=\"Observation-SARScoronavirus2SgenemutationdetectedPridPtXXXNomMolgenExample.html\">Observation/SARScoronavirus2SgenemutationdetectedPridPtXXXNomMolgenExample</a></li><li><a href=\"Observation-SARScoronavirus2SgenemutationPrThrPtXXXOrdMolgenExample.html\">Observation/SARScoronavirus2SgenemutationPrThrPtXXXOrdMolgenExample</a></li><li><a href=\"Observation-SARScoronavirus2lineagePridPtXXXNomMolgenExample.html\">Observation/SARScoronavirus2lineagePridPtXXXNomMolgenExample</a></li><li><a href=\"Observation-SARScoronavirus2cladeTypePtXXXNomMolgenExample.html\">Observation/SARScoronavirus2cladeTypePtXXXNomMolgenExample</a></li><li><a href=\"Observation-SARScoronavirus2variantTypePtXXXNomSequencingExample.html\">Observation/SARScoronavirus2variantTypePtXXXNomSequencingExample</a></li><li><a href=\"Observation-SARScoronavirus2variantinterpretationImpPtXXXNarExample.html\">Observation/SARScoronavirus2variantinterpretationImpPtXXXNarExample</a></li></ul></div>"
  ];
  fhir:Observation.status [ fhir:value "final"];
  fhir:Observation.category [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ];
       fhir:Coding.code [ fhir:value "laboratory" ]     ]
  ];
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:96894-1;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "96894-1" ]     ]
  ];
  fhir:Observation.subject [
     fhir:Reference.reference [ fhir:value "Patient/patient-anyperson-mary" ]
  ];
  fhir:Observation.effectiveDateTime [ fhir:value "2021-09-21"^^xsd:date];
  fhir:Observation.dataAbsentReason [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/data-absent-reason" ];
       fhir:Coding.code [ fhir:value "not-permitted" ]     ]
  ];
  fhir:Observation.hasMember [
     fhir:index 0;
     fhir:Reference.reference [ fhir:value "Observation/SequencingStudyIdentifierExample" ]
  ], [
     fhir:index 1;
     fhir:Reference.reference [ fhir:value "Observation/GISAIDSequenceAccessionNumberExample" ]
  ], [
     fhir:index 2;
     fhir:Reference.reference [ fhir:value "Observation/SARSCoV2wholegenomeSeqPtIsolateNomSequencingExample" ]
  ], [
     fhir:index 3;
     fhir:Reference.reference [ fhir:value "Observation/SARScoronavirus2SgenemutationdetectedPridPtXXXNomMolgenExample" ]
  ], [
     fhir:index 4;
     fhir:Reference.reference [ fhir:value "Observation/SARScoronavirus2SgenemutationPrThrPtXXXOrdMolgenExample" ]
  ], [
     fhir:index 5;
     fhir:Reference.reference [ fhir:value "Observation/SARScoronavirus2lineagePridPtXXXNomMolgenExample" ]
  ], [
     fhir:index 6;
     fhir:Reference.reference [ fhir:value "Observation/SARScoronavirus2cladeTypePtXXXNomMolgenExample" ]
  ], [
     fhir:index 7;
     fhir:Reference.reference [ fhir:value "Observation/SARScoronavirus2variantTypePtXXXNomSequencingExample" ]
  ], [
     fhir:index 8;
     fhir:Reference.reference [ fhir:value "Observation/SARScoronavirus2variantinterpretationImpPtXXXNarExample" ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.