INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/dicom-sr --branch master repo DEBUG:root:Time to deadline 35879.998102 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.58198 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.111971 seconds added 116 packages in 4s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New minor version of npm available! 9.5.1 -> 9.7.1 npm notice Changelog: npm notice Run `npm install -g npm@9.7.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/dicom-sr/ -out /scratch/ig-build-temp-X1ZVPE/repo DEBUG:root:Time to deadline 35872.582877 seconds FHIR IG Publisher Version 1.3.16 (Git# 31b23db2d0e8). Built 2023-06-08T22:42:01.117Z (4 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/ig-build-temp-X1ZVPE/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/dicom-sr/ -out /scratch/ig-build-temp-X1ZVPE/repo Start Clock @ Tuesday, June 13, 2023, 5:04:31 PM Coordinated Universal Time (2023-06-13T17:04:31Z) Build FHIR IG from /scratch/ig-build-temp-X1ZVPE/repo (00:00.015) API keys loaded from /etc/fhir-settings.json (00:00.016) Package Cache: var/lib/.fhir/packages (00:00.018) Run Sushi on /scratch/ig-build-temp-X1ZVPE/repo (00:00.022) Sushi: info Running SUSHI v3.0.0 (implements FHIR Shorthand specification v2.0.0) (00:00.561) Sushi: info Arguments: (00:00.561) Sushi: info --require-latest (00:00.561) Sushi: info --out /scratch/ig-build-temp-X1ZVPE/repo (00:00.561) Sushi: info /scratch/ig-build-temp-X1ZVPE/repo (00:00.561) Sushi: info Using configuration file: /scratch/ig-build-temp-X1ZVPE/repo/sushi-config.yaml (00:01.421) Sushi: info Importing FSH text... (00:01.547) Sushi: info Preprocessed 22 documents with 5 aliases. (00:01.700) Sushi: info Imported 18 definitions and 3 instances. (00:01.724) Sushi: info Checking /root/.fhir/packages for hl7.fhir.uv.tools#current... (00:01.726) Sushi: info Did not find hl7.fhir.uv.tools#current in /root/.fhir/packages. (00:01.727) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:01.857) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:01.867) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:01.925) Sushi: info Checking /root/.fhir/packages for hl7.terminology.r4#5.0.0... (00:02.481) Sushi: info Did not find hl7.terminology.r4#5.0.0 in /root/.fhir/packages. (00:02.497) Sushi: info Downloading hl7.terminology.r4#5.0.0... https://packages.fhir.org/hl7.terminology.r4/5.0.0 (00:02.497) Sushi: info Downloaded hl7.terminology.r4#5.0.0 (00:04.490) Sushi: info Loaded package hl7.terminology.r4#5.0.0 (00:05.789) Sushi: info Checking /root/.fhir/packages for hl7.fhir.uv.extensions#1.0.0... (00:06.244) Sushi: info Did not find hl7.fhir.uv.extensions#1.0.0 in /root/.fhir/packages. (00:06.570) Sushi: info Downloading hl7.fhir.uv.extensions#1.0.0... https://packages.fhir.org/hl7.fhir.uv.extensions/1.0.0 (00:06.570) Sushi: info Downloaded hl7.fhir.uv.extensions#1.0.0 (00:08.289) Sushi: info Loaded package hl7.fhir.uv.extensions#1.0.0 (00:09.152) Sushi: info Checking /root/.fhir/packages for fhir.dicom#2023.1.20230123... (00:09.152) Sushi: info Did not find fhir.dicom#2023.1.20230123 in /root/.fhir/packages. (00:09.627) Sushi: info Downloading fhir.dicom#2023.1.20230123... https://packages.fhir.org/fhir.dicom/2023.1.20230123 (00:09.627) Sushi: info Downloaded fhir.dicom#2023.1.20230123 (00:10.870) Sushi: info Loaded package fhir.dicom#2023.1.20230123 (00:11.581) Sushi: info Checking /root/.fhir/packages for hl7.fhir.r5.core#5.0.0... (00:11.581) Sushi: info Did not find hl7.fhir.r5.core#5.0.0 in /root/.fhir/packages. (00:12.126) Sushi: info Downloading hl7.fhir.r5.core#5.0.0... https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:12.126) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:14.877) Sushi: info Loaded package hl7.fhir.r5.core#5.0.0 (00:16.944) Sushi: info Converting FSH to FHIR resources... (00:16.990) Sushi: info Converted 17 FHIR StructureDefinitions. (00:20.849) Sushi: info Converted 1 FHIR CodeSystems. (00:20.876) Sushi: info Converted 3 FHIR instances. (00:21.118) Sushi: info Exporting FHIR resources as JSON... (00:21.185) Sushi: info Exported 21 FHIR resources as JSON. (00:21.323) Sushi: info Assembling Implementation Guide sources... (00:21.323) Sushi: info Generated ImplementationGuide-hl7.fhir.uv.dicom-sr.json (00:21.374) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:21.374) Sushi: (00:21.374) Sushi: ========================= SUSHI RESULTS =========================== (00:21.375) Sushi: | ------------------------------------------------------------- | (00:21.375) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:21.375) Sushi: | |-------------------------------------------------------------| | (00:21.375) Sushi: | | 17 | 0 | 0 | 0 | | (00:21.375) Sushi: | ------------------------------------------------------------- | (00:21.375) Sushi: | ------------------------------------------------------------- | (00:21.376) Sushi: | | ValueSets | CodeSystems | Instances | | (00:21.376) Sushi: | |-------------------------------------------------------------| | (00:21.376) Sushi: | | 0 | 1 | 3 | | (00:21.376) Sushi: | ------------------------------------------------------------- | (00:21.376) Sushi: | | (00:21.376) Sushi: =================================================================== (00:21.376) Sushi: | You're in the swim of things now! 0 Errors 0 Warnings | (00:21.376) Sushi: =================================================================== (00:21.376) Sushi: (00:21.376) Load Template from hl7.fhir.template#current (00:21.965) Installing hl7.fhir.template#current to the package cache Fetching: Installing: done. Load Template from hl7.base.template#current (00:22.419) Installing hl7.base.template#current to the package cache Fetching: Installing: done. Load Template from fhir.base.template#current (00:22.436) Installing fhir.base.template#current to the package cache Fetching: .. Installing: .. done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onLoad-ig-working.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/ig-build-temp-X1ZVPE/repo (00:25.028) Core Package hl7.fhir.r5.core#5.0.0 Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: ............................................................................ Installing: ............................................................................ done. Terminology Cache is at /scratch/ig-build-temp-X1ZVPE/repo/input-cache/txcache. Trimming now (00:40.787) Connect to Terminology Server at http://tx.fhir.org (00:40.788) 2023-06-13 17:05:26.746 [main] WARN o.h.f.r.u.client.FHIRToolingClient [FHIRToolingClient.java:165] Failed attempt to fetch http://tx.fhir.org/r4/metadata?mode=terminology java.net.SocketTimeoutException: timeout at okio.SocketAsyncTimeout.newTimeoutException(JvmOkio.kt:147) at okio.AsyncTimeout.access$newTimeoutException(AsyncTimeout.kt:158) at okio.AsyncTimeout$source$1.read(AsyncTimeout.kt:337) at okio.RealBufferedSource.indexOf(RealBufferedSource.kt:427) at okio.RealBufferedSource.readUtf8LineStrict(RealBufferedSource.kt:320) at okhttp3.internal.http1.HeadersReader.readLine(HeadersReader.kt:29) at okhttp3.internal.http1.Http1ExchangeCodec.readResponseHeaders(Http1ExchangeCodec.kt:178) at okhttp3.internal.connection.Exchange.readResponseHeaders(Exchange.kt:106) at okhttp3.internal.http.CallServerInterceptor.intercept(CallServerInterceptor.kt:79) at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:109) at okhttp3.internal.connection.ConnectInterceptor.intercept(ConnectInterceptor.kt:34) at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:109) at okhttp3.internal.cache.CacheInterceptor.intercept(CacheInterceptor.kt:95) at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:109) at okhttp3.internal.http.BridgeInterceptor.intercept(BridgeInterceptor.kt:83) at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:109) at okhttp3.internal.http.RetryAndFollowUpInterceptor.intercept(RetryAndFollowUpInterceptor.kt:76) at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:109) at org.hl7.fhir.r5.utils.client.network.RetryInterceptor.intercept(RetryInterceptor.java:60) at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:109) at org.hl7.fhir.r5.utils.client.network.FhirLoggingInterceptor.intercept(FhirLoggingInterceptor.java:45) at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.kt:109) at okhttp3.internal.connection.RealCall.getResponseWithInterceptorChain$okhttp(RealCall.kt:201) at okhttp3.internal.connection.RealCall.execute(RealCall.kt:154) at org.hl7.fhir.r5.utils.client.network.FhirRequestBuilder.execute(FhirRequestBuilder.java:225) at org.hl7.fhir.r5.utils.client.network.Client.executeFhirRequest(Client.java:200) at org.hl7.fhir.r5.utils.client.network.Client.issueGetResourceRequest(Client.java:73) at org.hl7.fhir.r5.utils.client.FHIRToolingClient.getCapabilities(FHIRToolingClient.java:155) at org.hl7.fhir.r5.utils.client.FHIRToolingClient.getTerminologyCapabilities(FHIRToolingClient.java:175) at org.hl7.fhir.convertors.txClient.TerminologyClientR5.getTerminologyCapabilities(TerminologyClientR5.java:96) at org.hl7.fhir.r5.context.SimpleWorkerContext.connectToTSServer(SimpleWorkerContext.java:335) at org.hl7.fhir.igtools.publisher.Publisher.initializeFromIg(Publisher.java:2926) at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:2350) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:930) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:11664) Caused by: java.net.SocketException: Socket closed at java.base/sun.nio.ch.NioSocketImpl.endRead(NioSocketImpl.java:243) at java.base/sun.nio.ch.NioSocketImpl.implRead(NioSocketImpl.java:323) at java.base/sun.nio.ch.NioSocketImpl.read(NioSocketImpl.java:346) at java.base/sun.nio.ch.NioSocketImpl$1.read(NioSocketImpl.java:796) at java.base/java.net.Socket$SocketInputStream.read(Socket.java:1099) at okio.InputStreamSource.read(JvmOkio.kt:94) at okio.AsyncTimeout$source$1.read(AsyncTimeout.kt:125) ... 32 common frames omitted Installing hl7.fhir.pubpack#0.1.4 to the package cache Fetching: .......... Installing: .......... done. Load Package hl7.fhir.pubpack#0.1.4 Installing hl7.fhir.xver-extensions#0.0.12 to the package cache Fetching: Installing: done. Load Package hl7.fhir.xver-extensions#0.0.12 Installing hl7.terminology.r5#5.0.0 to the package cache Fetching: .................................................................................... Installing: .................................................................................... done. Version mismatch. This IG is version 5.0.0, while the IG 'hl7tx' is from version 4.0.1 (will try to run anyway) (01:07.562) Load Package hl7.terminology.r5#5.0.0 Installing hl7.fhir.uv.extensions.r5#1.0.0 to the package cache Fetching: .................................... Installing: .................................... done. Load Package hl7.fhir.uv.extensions.r5#1.0.0 Installing fhir.dicom#2023.1.20230123 to the package cache Fetching: .......................... Installing: .......................... done. Version mismatch. This IG is version 5.0.0, while the IG 'fhir_dicom' is from version 4.0.1 (will try to run anyway) (01:12.028) Ignore Core Dependency on FHIR version 4.0.1, from package 'fhir.dicom#2023.1.20230123' (01:12.028) Load Package fhir.dicom#2023.1.20230123 Installing hl7.fhir.uv.tools#current to the package cache Fetching: .. Installing: .. done. Load Package hl7.fhir.uv.tools#current Initialization complete (01:14.395) Fetch http://hl7.org/fhir/dicom-sr/package-list.json for version check (01:14.397) Load Content (01:14.513) loadPrePages from FetchedFile[/scratch/ig-build-temp-X1ZVPE/repo/fsh-generated/includes] as /scratch/ig-build-temp-X1ZVPE/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/ig-build-temp-X1ZVPE/repo/input/pagecontent] as /scratch/ig-build-temp-X1ZVPE/repo/input/pagecontent Processing Conformance Resources (01:15.766) Generating Snapshots (01:16.241) Propagating status (01:21.259) Generating Narratives (01:21.259) Validating Conformance Resources (01:25.684) Validating Resources (01:49.343) Processing Provenance Records (01:49.344) Generating Outputs in /scratch/ig-build-temp-X1ZVPE/repo/output (01:49.344) Generate Native Outputs (01:49.396) Run Template (01:56.708) onGenerate.checkVersions: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/versions.txt [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/ig-build-temp-X1ZVPE/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/ig-build-temp-X1ZVPE/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/ig-build-temp-X1ZVPE/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-X1ZVPE/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/ig-build-temp-X1ZVPE/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-X1ZVPE/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-X1ZVPE/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-X1ZVPE/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 17 files to /scratch/ig-build-temp-X1ZVPE/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-working.1.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-X1ZVPE/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/properties.txt [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/ig-build-temp-X1ZVPE/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-dicom-sr.xml [get] To: /scratch/ig-build-temp-X1ZVPE/repo/input-cache/jiraspec.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-dicom-sr.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-dicom-sr.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-dicom-sr.xml [get] Can't get https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-dicom-sr.xml to /scratch/ig-build-temp-X1ZVPE/repo/input-cache/jiraspec.xml onGenerate.jira.packagelistcopy: onGenerate.jira.packagelistget: [get] Getting: http://hl7.org/fhir/dicom-sr/package-list.json [get] To: /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate.jira.workingpackage-list.json [get] Error opening connection java.io.FileNotFoundException: http://hl7.org/fhir/dicom-sr/package-list.json [get] Error opening connection java.io.FileNotFoundException: http://hl7.org/fhir/dicom-sr/package-list.json [get] Error opening connection java.io.FileNotFoundException: http://hl7.org/fhir/dicom-sr/package-list.json [get] Can't get http://hl7.org/fhir/dicom-sr/package-list.json to /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate.jira.workingpackage-list.json onGenerate.jira.packagelistProcess: onGenerate.jira.packagelistSkip: onGenerate.jira.pubrequestProcess: onGenerate.jira.pubrequestSkip: onGenerate.jira.generate: [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate.jira.tmp.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate.jira.tmp2.xml [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.process-pkg-list.xslt [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate.jira.tmp2.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate.jira.xml [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.jira.xslt [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/template/onGenerate.jira.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/ig-build-temp-X1ZVPE/repo/input-cache/jiraspec.xml to /scratch/ig-build-temp-X1ZVPE/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/ig-build-temp-X1ZVPE/repo/template/scripts/onGenerate.normalize.xslt [copy] Copying 1 file to /scratch/ig-build-temp-X1ZVPE/repo onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (01:58.609) Generate HTML Outputs (01:58.610) Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/referenced-segment#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/referenced-segment#ImagingSelection.instance:referencedSegment.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/referenced-segment#ImagingSelection.instance:referencedSegment.sopClass not found ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/illustration-of-roi#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/illustration-of-roi#ImagingSelection.instance:sourceInstances.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/image-region-3d#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/source-series-for-segmentation#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/source-series-for-segmentation#ImagingSelection.instance:sourceInstances.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/source-series-for-segmentation#ImagingSelection.instance:sourceInstances.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/volume-surface#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/referenced-segmentation-frame#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/referenced-segmentation-frame#ImagingSelection.instance:referencedSegmentationFrame.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/referenced-segmentation-frame#ImagingSelection.instance:referencedSegmentationFrame.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/real-world-value-map#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/real-world-value-map#ImagingSelection.instance:valueMapInstance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/real-world-value-map#ImagingSelection.instance:valueMapInstance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/image-region-2d#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/image-region-2d#ImagingSelection.instance:imageInstance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/region-in-space#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/region-in-space#ImagingSelection.instance:rtStructureInstance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/region-in-space#ImagingSelection.instance:rtStructureInstance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/source-image-for-segmentation#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/source-image-for-segmentation#ImagingSelection.instance:sourceInstances.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/source-image-for-segmentation#ImagingSelection.instance:sourceInstances.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/visual-explanation#ImagingSelection.instance.sopClass not found Value set 'http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1' at http://hl7.org/fhir/dicom-sr/StructureDefinition/visual-explanation#ImagingSelection.instance:sourceInstances.sopClass not found Generate Summaries (02:27.758) Generating Summary Outputs (02:27.758) Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: .................................................................................................... Installing: .................................................................................................... done. Sending Usage Stats to Server (02:40.972) ## Memory (MB): Use = 11287, Free = 7712, Total = 19008, Max =19008 Reclaiming memory... ## Memory (MB): Use = 788, Free = 18219, Total = 19008, Max =19008 Run jekyll: jekyll build --destination "/scratch/ig-build-temp-X1ZVPE/repo/output" (in folder /scratch/ig-build-temp-X1ZVPE/repo/temp/pages) (02:41.419) Jekyll: Source: /scratch/ig-build-temp-X1ZVPE/repo/temp/pages (02:41.722) Jekyll: Generating... (02:41.722) Jekyll: done in 1.532 seconds. (02:43.254) Checking Output HTML (02:44.616) found 890 files (02:44.620) ........................................ ........................................ ... 890 html files, 0 pages invalid xhtml (0%) (03:10.186) ... 338820 links, 34 broken links (0%) (03:10.186) Build final .zip (03:10.186) Final .zip built (03:11.881) Built. Times: loading: 00:01.252, generate: 01:58.354, narrative generation: 00:04.424, realm-rules: 00:00.000, previous-version: 00:00.000, jekyll: 00:01.847, validation: 00:23.629 (#22), template: 00:01.901 (#3) (03:14.127) Validation output in /scratch/ig-build-temp-X1ZVPE/repo/output/qa.html Errors: 109, Warnings: 49, Info: 19, Broken Links: 34 (03:14.486) Finished (03:14.492) Done (03:14.492)