INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/davinci-ra --branch master repo DEBUG:root:Time to deadline 35879.998264 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35877.524053 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35876.505861 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.3 npm notice Changelog: npm notice Run `npm install -g npm@11.6.3` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-ra/ -out /scratch/repo DEBUG:root:Time to deadline 35870.01115 seconds FHIR IG Publisher Version 2.0.26 (Git# 0a43ac207d1f). Built 2025-11-06T09:21:35.314Z (14 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-ra/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, November 20, 2025, 7:49:53 PM Coordinated Universal Time (2025-11-20T19:49:53Z) Build FHIR IG from /scratch/repo (00:00.024 / 00:00.024, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.027, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.030, 97Mb) Found dependency on hl7.fhir.us.core#7.0.0 in Sushi config. Pre-installing (00:00.005 / 00:00.035, 97Mb) Installing hl7.fhir.us.core#7.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#7.0.0  done. Found dependency on hl7.fhir.us.core.v610#6.1.0 in Sushi config. Pre-installing (00:06.208 / 00:06.243, 73Mb) Installing hl7.fhir.us.core.v610#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core.v610#6.1.0  done. Found dependency on hl7.fhir.us.core.v311#3.1.1 in Sushi config. Pre-installing (00:02.113 / 00:08.357, 78Mb) Installing hl7.fhir.us.core.v311#3.1.1 to the package cache  Fetching:  Installing hl7.fhir.us.core.v311#3.1.1  done. Found dependency on hl7.fhir.uv.crmi#1.0.0 in Sushi config. Pre-installing (00:01.038 / 00:09.395, 82Mb) Installing hl7.fhir.uv.crmi#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.crmi#1.0.0  done. Found dependency on hl7.fhir.uv.extensions.r4#5.2.0 in Sushi config. Pre-installing (00:01.006 / 00:10.402, 105Mb) Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Run Sushi on /scratch/repo (00:01.410 / 00:11.813, 145Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.578 / 00:12.391, 153Mb) Sushi: info Arguments: (00:00.000 / 00:12.391, 153Mb) Sushi: info --require-latest (00:00.000 / 00:12.392, 153Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:12.392, 153Mb) Sushi: info /scratch/repo (00:00.000 / 00:12.392, 153Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.577 / 00:12.970, 153Mb) Sushi: info Importing FSH text... (00:00.131 / 00:13.101, 153Mb) Sushi: info Preprocessed 3 documents with 1 aliases. (00:00.093 / 00:13.195, 153Mb) Sushi: info Imported 11 definitions and 0 instances. (00:00.006 / 00:13.202, 153Mb) Sushi: warn Detected FSH entity definitions with duplicate names. While FSH allows for duplicate names across entity types, they can lead to ambiguous results when referring to these entities by name elsewhere (e.g., in references). Consider using unique names in FSH declarations and assigning duplicated names using caret assignment rules instead. Detected duplicate names: RiskAdjustmentConditionCategoryType, CodingGapRemark, RiskAdjustmentEvidenceStatus, RiskAdjustmenthierarchicalStatus, RemarkReason. (00:00.005 / 00:13.207, 153Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.092 / 00:13.300, 153Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.606 / 00:13.906, 153Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.000 / 00:13.907, 153Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.844 / 00:14.751, 153Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:14.753, 153Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.065 / 00:14.819, 153Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.0 (00:00.472 / 00:15.291, 153Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.0 from https://packages.fhir.org/hl7.terminology.r4/7.0.0 (00:00.000 / 00:15.291, 153Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.0 (00:02.637 / 00:17.929, 153Mb) Sushi: info Cached hl7.terminology.r4#7.0.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.0 (00:00.001 / 00:17.930, 153Mb) Sushi: info Loaded hl7.terminology.r4#7.0.0 with 4096 resources (00:01.196 / 00:19.127, 153Mb) Sushi: info Loaded hl7.fhir.us.core#7.0.0 with 211 resources (00:00.094 / 00:19.221, 153Mb) Sushi: info Loaded hl7.fhir.us.core.v610#6.1.0 with 0 resources (00:00.000 / 00:19.222, 153Mb) Sushi: info Loaded hl7.fhir.us.core.v311#3.1.1 with 0 resources (00:00.000 / 00:19.223, 153Mb) Sushi: info Loaded hl7.fhir.uv.crmi#1.0.0 with 79 resources (00:00.049 / 00:19.272, 153Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.223 / 00:19.496, 153Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:19.497, 153Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.019 / 00:22.517, 153Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:22.518, 153Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.219 / 00:23.738, 153Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 114 resources (00:00.127 / 00:23.865, 153Mb) Sushi: info Converting FSH to FHIR resources... (00:00.024 / 00:23.889, 153Mb) Sushi: info Converted 5 FHIR CodeSystems. (00:00.120 / 00:24.009, 153Mb) Sushi: info Converted 6 FHIR ValueSets. (00:00.096 / 00:24.106, 153Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:24.107, 153Mb) Sushi: info Exported 11 FHIR resources as JSON. (00:00.059 / 00:24.166, 153Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:24.168, 153Mb) Sushi: info Generated ImplementationGuide-davinci-ra.json (00:00.091 / 00:24.259, 153Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:24.260, 153Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:24.261, 153Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.261, 153Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:24.261, 153Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:24.262, 153Mb) Sushi: | | 0 | 0 | 0 | 0 | | (00:00.000 / 00:24.262, 153Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.262, 153Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.262, 153Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:24.262, 153Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:24.262, 153Mb) Sushi: | | 6 | 5 | 0 | | (00:00.000 / 00:24.263, 153Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:24.263, 153Mb) Sushi: | | (00:00.000 / 00:24.263, 153Mb) Sushi: =================================================================== (00:00.000 / 00:24.263, 153Mb) Sushi: | You're kraken me up. 0 Errors 1 Warning | (00:00.000 / 00:24.263, 153Mb) Sushi: =================================================================== (00:00.000 / 00:24.263, 153Mb) Root directory: /scratch/repo (00:00.021 / 00:24.285, 153Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.544 / 00:24.829, 56Mb) Load Template from hl7.fhir.template#1.0.0 (00:00.489 / 00:25.319, 57Mb) Installing hl7.fhir.template#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.template#1.0.0  done.  Load Template from hl7.base.template#1.0.0 (00:00.392 / 00:25.711, 65Mb) Installing hl7.base.template#1.0.0 to the package cache  Fetching:  Installing hl7.base.template#1.0.0  done.  Load Template from fhir.base.template#1.0.0 (00:00.326 / 00:26.037, 81Mb) Installing fhir.base.template#1.0.0 to the package cache  Fetching:  Installing fhir.base.template#1.0.0  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.894 / 00:29.932, 393Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:29.933, 393Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-1945057012520821869.html Connect to Terminology Server at http://tx.fhir.org (00:28.888 / 00:58.821, 288Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#7.0.0 Installing hl7.terminology.r4#5.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.5.0  done. Load Package hl7.terminology.r4#5.5.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.18.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.18.0  done. Load Package us.nlm.vsac#0.18.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:23.949 / 01:22.770, 1Gb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Installing hl7.fhir.uv.extensions.r4#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.fhir.us.core#7.0.0 Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package hl7.fhir.us.core.v610#6.1.0 Installing hl7.fhir.us.core#3.1.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#3.1.1  done. Load Package hl7.fhir.us.core#3.1.1 Load Package hl7.fhir.us.core.v311#3.1.1 Installing hl7.terminology#5.5.0 to the package cache  Fetching:  Installing hl7.terminology#5.5.0  done. Load Package hl7.terminology#5.5.0 Load Package hl7.fhir.uv.crmi#1.0.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (01:10.697 / 02:33.468, 3Gb) Load IG (00:00.000 / 02:33.468, 3Gb) Load Content (00:00.002 / 02:33.471, 3Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.154 / 02:33.626, 3Gb) Process Loaded Resources (00:03.707 / 02:37.333, 904Mb) Generating Snapshots (00:00.862 / 02:38.195, 1Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/davinci-ra/package-list.json for version check (00:01.467 / 02:39.663, 903Mb) Checking Language (00:00.181 / 02:39.844, 911Mb) Load Dependency Info (00:00.005 / 02:39.850, 911Mb) Load Info (00:00.002 / 02:39.852, 911Mb) Load Paths (00:00.000 / 02:39.853, 919Mb) Check R4 / R4B (00:00.000 / 02:39.854, 919Mb) Assign Comparison Ids (00:00.066 / 02:39.920, 943Mb) Propagating status (00:00.000 / 02:39.921, 943Mb) Generating Narratives (00:00.016 / 02:39.938, 943Mb) Validating Conformance Resources (00:03.420 / 02:43.358, 2Gb) Check profiles & code systems (00:26.565 / 03:09.924, 6Gb) Check realm rules (00:00.002 / 03:09.926, 6Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:02.798 / 03:12.725, 1Gb) Installing hl7.fhir.us.davinci-ra#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-ra#1.0.0  done. Installing hl7.terminology.r4#3.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#3.1.0  done. Installing hl7.fhir.us.davinci-ra#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-ra#2.0.0  done. Installing hl7.terminology.r4#6.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.1.0  done. Checking for Bundles to sign (00:37.632 / 03:50.358, 3Gb) Validating Resources (00:00.000 / 03:50.358, 3Gb) Processing Provenance Records (00:15.041 / 04:05.400, 4Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 04:05.401, 4Gb) Generate Native Outputs (00:00.304 / 04:05.705, 4Gb) Run Template (00:05.919 / 04:11.624, 5Gb) Generate HTML Outputs (00:05.020 / 04:16.645, 5Gb) Generate Spreadsheets (00:14.114 / 04:30.760, 5Gb) Generate Summaries (00:03.604 / 04:34.364, 2Gb) Generating Summary Outputs (00:00.000 / 04:34.364, 2Gb) DB Cumulative Time invested: 00:00:01.223 Sending Usage Stats to Server (00:15.356 / 04:49.721, 2Gb) ## Memory (MB): Use = 2350, Free = 16657, Total = 19008, Max = 19008 (00:00.007 / 04:49.729, 2Gb) Reclaiming memory... (00:00.000 / 04:49.729, 2Gb) ## Memory (MB): Use = 1970, Free = 17037, Total = 19008, Max = 19008 (00:01.318 / 04:51.047, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 04:51.049, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 04:51.049, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 04:51.049, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 04:51.049, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.442 / 04:51.492, 1Gb) Jekyll: Generating... (00:00.000 / 04:51.492, 1Gb) Jekyll: done in 3.797 seconds. (00:03.796 / 04:55.289, 1Gb) Checking Output HTML (00:02.373 / 04:57.662, 3Gb) Processed /scratch/repo/output - % reduction = 98 (54048426 ==> 1224711) found 2175 files (00:02.199 / 04:59.862, 4Gb) ........................................ ........................................ ... 2175 html files, 0 pages invalid xhtml (0%) (00:19.396 / 05:19.258, 6Gb) ... 252882 links, 0 broken links (0%) (00:00.000 / 05:19.258, 6Gb) Generate fragment-usage-analysis.csv (00:00.000 / 05:19.258, 6Gb) Build final .zip (00:00.005 / 05:19.264, 6Gb) Final .zip built (00:03.204 / 05:22.469, 6Gb) Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Installing hl7.fhir.uv.extensions#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#5.1.0-snapshot1  done. Installing hl7.terminology.r5#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r5#5.3.0  done. Built. Times: loading: 00:06.373, generate: 03:20.933, propagating status: 00:00.016, narrative generation: 00:03.420, realm-rules: 00:02.798, previous-version: 00:37.606, jekyll: 00:04.272, validation: 00:41.358 (#126), template: 00:04.915 (#3) (00:38.309 / 06:00.778, 9Gb) Generating QA (00:00.000 / 06:00.778, 9Gb) Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/output/StructureDefinition-ra-ccRemark-definitions.html', err = 'The html source has duplicate anchor Ids: Extension.extension:relatedData.value[x],diff_Extension.ex' Validation output in /scratch/repo/output/qa.html Errors: 13, Warnings: 65, Info: 34, Broken Links: 0 (00:00.529 / 06:01.307, 9Gb) Finished @ 11/20/25, 7:55 PM. Max Memory Used = 9Gb (00:00.055 / 06:01.363, 9Gb)