{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### inspect Parameters, Q and QR examples for attachments and submit-attachments operation\n",
    "\n",
    "see this spreadsheet: input/examples-yaml/cdex-parameters-examples.csv"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from pathlib import Path\n",
    "from json import loads, dumps\n",
    "from yaml import safe_load as loady, safe_dump as dumpy\n",
    "my_types = ['Parameters', 'Questionnaire', 'QuestionnaireResponse']\n",
    "!pwd\n",
    "for f in Path(r'input/examples-yaml').glob('cdex-*.yml'):\n",
    "    myobj = loady(f.read_text())\n",
    "    if myobj['resourceType'] in my_types:\n",
    "        print(f'========{f}========')\n",
    "        print(myobj['id'])\n",
    "        # print(dumpy(myobj['meta']))\n",
    "        try:\n",
    "            print(dumpy(myobj['parameter'][0], sort_keys=False))\n",
    "        except:\n",
    "            pass"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Convert examples to includes\n",
    "\n",
    "- strip ids and meta\n",
    "- update to input/includes-yaml"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from pathlib import Path\n",
    "from json import loads, dumps\n",
    "from yaml import safe_load as loady, safe_dump as dumpy\n",
    "!pwd\n",
    "\n",
    "for f in Path(r'input/examples-yaml').glob('cdex-*.yml'):\n",
    "\n",
    "    myobj = loady(f.read_text())\n",
    "    if myobj['resourceType'] in my_types:\n",
    "        print(f'========{f}========')\n",
    "        print(myobj['id'])\n",
    "        myobj.pop('id')\n",
    "        myobj.pop('meta')\n",
    "        print(f'{dumpy(myobj, sort_keys=False)[0:150]}.....')\n",
    "        print('printing to...', out := f\"input/includes-yaml/{f.name}\")\n",
    "        Path(out).write_text(dumpy(myobj, indent=2, sort_keys=False))\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### inspect task examples for task-based and requesting attachments \n",
    "see this spreadsheet: input/examples-yaml/cdex-task-examples.csv"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from pathlib import Path\n",
    "from json import loads, dumps\n",
    "from yaml import safe_load as loady, safe_dump as dumpy\n",
    "\n",
    "keep_id_list = ['cdex-task-example19','cdex-task-example22','cdex-task-example26']\n",
    "\n",
    "!pwd\n",
    "\n",
    "for f in Path(r'input/examples-yaml').glob('cdex-task*.yml'):\n",
    "    print(f'========{f}========')\n",
    "    myobj = loady(f.read_text())\n",
    "    print(task_id := myobj['id'])\n",
    "    if task_id == 'cdex-task-example20':\n",
    "        print(\"========\")\n",
    "        print(dumpy(myobj['reasonCode']))\n",
    "        print(\"========\")\n",
    "    if task_id in keep_id_list:\n",
    "        print(\"++++++++\")\n",
    "        print(f\"keep id for: {dumpy(myobj['id'])}\")\n",
    "        print(\"++++++++\")\n",
    "    # for input in myobj[\"input\"]:\n",
    "    #     if input['type']['coding'][0]['code'] == 'purpose-of-use':\n",
    "    #         print(dumpy(input)) "
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Convert Task examples to includes\n",
    "\n",
    "- strip ids and meta\n",
    "- update to input/includes-yaml"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from pathlib import Path\n",
    "from json import loads, dumps\n",
    "from yaml import safe_load as loady, safe_dump as dumpy\n",
    "from fhir.resources import task as Task"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!pwd\n",
    "p_code = 'CLMATTCH' #default\n",
    "p_display = 'claim attachment' #default\n",
    "\n",
    "\n",
    "keep_profile_list = ['cdex-task-example19','cdex-task-example22']\n",
    "update_example_id = {'cdex-task-example24': 'cdex-task-example22',\n",
    "                   'cdex-task-example27': 'cdex-task-example26'}\n",
    "POU = f'''type:\n",
    "  coding:\n",
    "  - code: purpose-of-use\n",
    "    system: http://hl7.org/fhir/us/davinci-cdex/CodeSystem/cdex-temp\n",
    "valueCodeableConcept:\n",
    "  coding:\n",
    "  - code: {p_code}\n",
    "    system: http://terminology.hl7.org/CodeSystem/v3-ActReason\n",
    "    display: {p_display}\n",
    "'''\n",
    "print(POU)\n",
    "\n",
    "for f in Path(r'input/examples-yaml').glob('cdex-task*.yml'):\n",
    "    print(f'========{f}========')\n",
    "    myobj = loady(f.read_text())\n",
    "    if Task.Task(**myobj):\n",
    "      print('valid')\n",
    "      print(task_id := myobj['id'])\n",
    "      if task_id in keep_profile_list:\n",
    "        myobj['meta'].pop('extension')\n",
    "      else:\n",
    "        myobj.pop('meta')\n",
    "      print(f'{dumpy(myobj, sort_keys=False)[0:150]}.....')\n",
    "      print('printing to...', out := f\"input/includes-yaml/{f.stem}-currentid.yml\")\n",
    "      Path(out).write_text(dumpy(myobj, indent=2, sort_keys=False))\n",
    "\n",
    "      if task_id in update_example_id.keys():\n",
    "          # p_code = 'CLMATTCH'\n",
    "          # p_display = 'claim attachment'\n",
    "          # myobj['input'].append(loady(POU))\n",
    "          # print(dumpy(myobj['meta']))\n",
    "          # myobj['meta'].pop('extension')\n",
    "          myobj['id'] = update_example_id[task_id]\n",
    "          print(f'{dumpy(myobj, sort_keys=False)[0:150]}.....')\n",
    "          print('printing to...', out := f\"input/includes-yaml/{f.stem}-updateid.yml\")\n",
    "          Path(out).write_text(dumpy(myobj, indent=2, sort_keys=False))\n",
    "        \n",
    "      myobj.pop('id')\n",
    "      print(f'{dumpy(myobj, sort_keys=False)[0:150]}.....')\n",
    "      print('printing to...', out := f\"input/includes-yaml/{f.name}\")\n",
    "      Path(out).write_text(dumpy(myobj, indent=2, sort_keys=False))\n",
    "      print(f'{dumpy(myobj, sort_keys=False)[0:150]}.....')\n",
    "      print('printing to...', out := f\"input/includes-yaml/{f.name}\")\n",
    "      Path(out).write_text(dumpy(myobj, indent=2, sort_keys=False))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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