INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/davinci-ecdx --branch master repo DEBUG:root:Time to deadline 35879.997632 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.425051 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.454782 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 140 packages in 7s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.1 npm notice Changelog: npm notice Run `npm install -g npm@11.5.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-ecdx/ -out /scratch/repo DEBUG:root:Time to deadline 35870.653738 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (64 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-ecdx/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, July 25, 2025, 11:07:04 PM Coordinated Universal Time (2025-07-25T23:07:04Z) Build FHIR IG from /scratch/repo (00:00.023 / 00:00.024, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.026, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.028, 97Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.571 / 00:00.600, 37Mb) Load Template from hl7.davinci.template#current (00:00.537 / 00:01.137, 94Mb) Installing hl7.davinci.template#current to the package cache  Fetching:  Installing hl7.davinci.template#current  done.  Load Template from hl7.fhir.template#current (00:01.163 / 00:02.301, 150Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.232 / 00:02.534, 150Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir.base.template#current (00:00.191 / 00:02.725, 150Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:03.874 / 00:06.600, 172Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:06.602, 172Mb) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-5053038004742791727.html Connect to Terminology Server at http://tx.fhir.org (00:33.747 / 00:40.350, 205Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Load Package hl7.terminology.r4#6.5.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.us.core#7.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#7.0.0  done. Installing hl7.terminology.r4#5.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.5.0  done. Load Package hl7.terminology.r4#5.5.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.18.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.18.0  done. Load Package us.nlm.vsac#0.18.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:27.560 / 01:07.910, 712Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Installing hl7.fhir.uv.extensions.r4#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.fhir.us.core#7.0.0 Installing hl7.fhir.us.core.v610#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core.v610#6.1.0  done. Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package hl7.fhir.us.core.v610#6.1.0 Installing hl7.fhir.us.core.v311#3.1.1 to the package cache  Fetching:  Installing hl7.fhir.us.core.v311#3.1.1  done. Installing hl7.fhir.us.core#3.1.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#3.1.1  done. Load Package hl7.fhir.us.core#3.1.1 Load Package hl7.fhir.us.core.v311#3.1.1 Installing hl7.fhir.us.davinci-hrex#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-hrex#1.1.0  done. Installing hl7.terminology.r4#6.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.1.0  done. Load Package hl7.terminology.r4#6.1.0 Installing us.nlm.vsac#0.19.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.19.0  done. Load Package us.nlm.vsac#0.19.0 Load Package hl7.fhir.us.davinci-hrex#1.1.0 Installing hl7.fhir.us.davinci-pas#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-pas#2.1.0  done. Installing hl7.fhir.us.davinci-crd#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-crd#2.0.0  done. Installing hl7.terminology.r4#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.3.0  done. Load Package hl7.terminology.r4#5.3.0 Installing hl7.fhir.us.davinci-hrex#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-hrex#1.0.0  done. Installing hl7.fhir.us.udap-security#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.udap-security#0.1.0  done. Load Package hl7.fhir.us.udap-security#0.1.0 Load Package hl7.fhir.us.davinci-hrex#1.0.0 Load Package hl7.fhir.us.davinci-crd#2.0.0 Installing hl7.fhir.uv.subscriptions-backport.r4#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.subscriptions-backport.r4#1.1.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.core#4.0.0, from package 'hl7.fhir.uv.subscriptions-backport.r4#1.1.0' (01:57.659 / 03:05.569, 945Mb) Load Package hl7.fhir.uv.subscriptions-backport.r4#1.1.0 Installing hl7.fhir.us.carin-bb#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.carin-bb#2.0.0  done. Installing us.nlm.vsac#0.7.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.7.0  done. Load Package us.nlm.vsac#0.7.0 Load Package hl7.fhir.us.carin-bb#2.0.0 Load Package hl7.fhir.us.davinci-pas#2.1.0 Load Package hl7.fhir.us.carin-bb#2.0.0 Installing hl7.fhir.us.davinci-dtr#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-dtr#2.1.0  done. Installing hl7.fhir.us.davinci-crd#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-crd#2.1.0  done. Load Package hl7.fhir.us.davinci-crd#2.1.0 Load Package hl7.fhir.us.davinci-dtr#2.1.0 Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (01:30.940 / 04:36.510, 1Gb) Load Package hl7.fhir.uv.sdc#3.0.0 Ignore Dependency on Core FHIR hl7.fhir.r4.core#4.0.0, from package 'hl7.fhir.uv.subscriptions-backport.r4#1.1.0' (00:00.025 / 04:36.535, 1Gb) Load Package hl7.fhir.uv.subscriptions-backport.r4#1.1.0 Installing hl7.fhir.uv.tools.r4#0.7.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.7.0  done. Load Package hl7.fhir.uv.tools.r4#0.7.0 Installing hl7.fhir.us.davinci-cdex#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#2.0.0  done. Installing hl7.fhir.us.davinci-cdex#2.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#2.0.0-ballot  done. Installing hl7.fhir.us.davinci-cdex#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#1.1.0  done. Installing hl7.fhir.us.davinci-cdex#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#1.0.0  done. Installing hl7.fhir.us.davinci-cdex#0.2.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#0.2.0  done. Installing hl7.fhir.us.davinci-cdex#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#0.1.0  done. Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:12.446 / 04:48.982, 1Gb) Load IG (00:00.000 / 04:48.982, 1Gb) Load Content (00:00.001 / 04:48.983, 1Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.154 / 04:49.138, 1Gb) Process Loaded Resources (00:02.107 / 04:51.246, 1Gb) Generating Snapshots (00:00.695 / 04:51.941, 1Gb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/data] as /scratch/repo/input/data loadPrePages from FetchedFile[/scratch/repo/input/intro-notes] as /scratch/repo/input/intro-notes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/davinci-cdex/package-list.json for version check (00:01.587 / 04:53.529, 1Gb) Processing Conformance Resources (00:00.226 / 04:53.755, 1Gb) Checking Language (00:00.000 / 04:53.755, 1Gb) Load Dependency Info (00:00.002 / 04:53.758, 1Gb) Load Info (00:00.001 / 04:53.759, 1Gb) Load Paths (00:00.000 / 04:53.760, 1Gb) Check R4 / R4B (00:00.000 / 04:53.761, 1Gb) Assign Comparison Ids (00:00.089 / 04:53.850, 1Gb) Propagating status (00:00.000 / 04:53.850, 1Gb) Generating Narratives (00:00.081 / 04:53.932, 1Gb) Validating Conformance Resources (00:05.200 / 04:59.132, 1Gb) Check profiles & code systems (01:01.331 / 06:00.464, 2Gb) Check realm rules (00:00.003 / 06:00.467, 2Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:04.805 / 06:05.272, 3Gb) Installing hl7.fhir.us.davinci-pas#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-pas#1.1.0  done. Installing hl7.fhir.us.core#3.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#3.1.0  done. Installing hl7.terminology.r4#3.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#3.1.0  done. Installing hl7.fhir.us.carin-bb#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.carin-bb#1.1.0  done. Installing hl7.fhir.us.davinci-pas#1.2.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.davinci-pas#1.2.0-ballot  done. Installing hl7.fhir.us.davinci-dtr#1.1.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.davinci-dtr#1.1.0-ballot  done. Installing hl7.fhir.uv.sdc#3.0.0-preview to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0-preview  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Checking for Bundles to sign (01:37.189 / 07:42.462, 2Gb) Validating Resources (00:00.000 / 07:42.463, 2Gb) Processing Provenance Records (00:12.202 / 07:54.665, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 07:54.665, 2Gb) Generate Native Outputs (00:00.239 / 07:54.904, 2Gb) Run Template (00:06.528 / 08:01.433, 3Gb) Generate HTML Outputs (00:03.242 / 08:04.675, 4Gb) Generate Spreadsheets (00:15.195 / 08:19.871, 4Gb) Generate Summaries (00:03.318 / 08:23.189, 5Gb) Generating Summary Outputs (00:00.000 / 08:23.189, 5Gb) DB Cumulative Time invested: 00:00:01.686 Sending Usage Stats to Server (00:25.477 / 08:48.666, 3Gb) ## Memory (MB): Use = 3869, Free = 15138, Total = 19008, Max = 19008 (00:00.004 / 08:48.671, 3Gb) Reclaiming memory... (00:00.000 / 08:48.671, 3Gb) ## Memory (MB): Use = 2244, Free = 16763, Total = 19008, Max = 19008 (00:01.411 / 08:50.083, 2Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.008 / 08:50.091, 2Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.010 / 08:50.102, 2Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 08:50.105, 2Gb) * A reference to a manually edited file that hasn't been provided (00:00.002 / 08:50.106, 2Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.463 / 08:50.570, 2Gb) Jekyll: Generating... (00:00.000 / 08:50.570, 2Gb) Jekyll: done in 4.578 seconds. (00:04.578 / 08:55.148, 2Gb) Checking Output HTML (00:02.987 / 08:58.135, 3Gb) found 1596 files (00:00.011 / 08:58.147, 3Gb) ........................................ ........................................ ... 1596 html files, 2 pages invalid xhtml (0%) (00:16.331 / 09:14.478, 11Gb) ... 259638 links, 2 broken links (0%) (00:00.000 / 09:14.478, 11Gb) Publishing Content Failed: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: signed-document-bundle-example.md, signed-searchset-bundle-example.md). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations (00:00.023 / 09:14.502, 11Gb) (00:00.000 / 09:14.502, 11Gb) Use -? to get command line help (00:00.000 / 09:14.502, 11Gb) (00:00.000 / 09:14.502, 11Gb) Stack Dump (for debugging): (00:00.000 / 09:14.503, 11Gb) org.hl7.fhir.exceptions.FHIRException: The auto-build infrastructure does not publish IGs unless the publish-box is present (Unable to Parse: signed-document-bundle-example.md, signed-searchset-bundle-example.md). For further information, see note at http://wiki.hl7.org/index.php?title=FHIR_Implementation_Guide_Publishing_Requirements#HL7_HTML_Standards_considerations at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:9128) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1199) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1029) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:15805)