INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/davinci-ecdx --branch master repo DEBUG:root:Time to deadline 35879.996917 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.373317 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35876.947429 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.1 npm notice Changelog: npm notice Run `npm install -g npm@11.5.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-ecdx/ -out /scratch/repo DEBUG:root:Time to deadline 35870.284795 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (38 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-ecdx/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, July 24, 2025, 9:12:50 PM Coordinated Universal Time (2025-07-24T21:12:50Z) Build FHIR IG from /scratch/repo (00:00.030 / 00:00.031, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.035, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.038, 97Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.672 / 00:00.711, 38Mb) Load Template from hl7.davinci.template#current (00:00.597 / 00:01.308, 94Mb) Installing hl7.davinci.template#current to the package cache  Fetching:  Installing hl7.davinci.template#current  done.  Load Template from hl7.fhir.template#current (00:01.361 / 00:02.670, 150Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.263 / 00:02.933, 150Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir.base.template#current (00:00.262 / 00:03.196, 150Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:03.925 / 00:07.121, 226Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:07.124, 226Mb) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-6501524428963372004.html Connect to Terminology Server at http://tx.fhir.org (00:41.326 / 00:48.451, 642Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Load Package hl7.terminology.r4#6.5.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.us.core#7.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#7.0.0  done. Installing hl7.terminology.r4#5.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.5.0  done. Load Package hl7.terminology.r4#5.5.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.18.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.18.0  done. Load Package us.nlm.vsac#0.18.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:29.373 / 01:17.825, 1Gb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Installing hl7.fhir.uv.extensions.r4#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.fhir.us.core#7.0.0 Installing hl7.fhir.us.core.v610#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core.v610#6.1.0  done. Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package hl7.fhir.us.core.v610#6.1.0 Installing hl7.fhir.us.core.v311#3.1.1 to the package cache  Fetching:  Installing hl7.fhir.us.core.v311#3.1.1  done. Installing hl7.fhir.us.core#3.1.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#3.1.1  done. Load Package hl7.fhir.us.core#3.1.1 Load Package hl7.fhir.us.core.v311#3.1.1 Installing hl7.fhir.us.davinci-hrex#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-hrex#1.1.0  done. Installing hl7.terminology.r4#6.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.1.0  done. Load Package hl7.terminology.r4#6.1.0 Installing us.nlm.vsac#0.19.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.19.0  done. Load Package us.nlm.vsac#0.19.0 Load Package hl7.fhir.us.davinci-hrex#1.1.0 Installing hl7.fhir.us.davinci-pas#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-pas#2.1.0  done. Installing hl7.fhir.us.davinci-crd#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-crd#2.0.0  done. Installing hl7.terminology.r4#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.3.0  done. Load Package hl7.terminology.r4#5.3.0 Installing hl7.fhir.us.davinci-hrex#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-hrex#1.0.0  done. Installing hl7.fhir.us.udap-security#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.udap-security#0.1.0  done. Load Package hl7.fhir.us.udap-security#0.1.0 Load Package hl7.fhir.us.davinci-hrex#1.0.0 Load Package hl7.fhir.us.davinci-crd#2.0.0 Installing hl7.fhir.uv.subscriptions-backport.r4#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.subscriptions-backport.r4#1.1.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.core#4.0.0, from package 'hl7.fhir.uv.subscriptions-backport.r4#1.1.0' (02:10.083 / 03:27.909, 1Gb) Load Package hl7.fhir.uv.subscriptions-backport.r4#1.1.0 Installing hl7.fhir.us.carin-bb#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.carin-bb#2.0.0  done. Installing us.nlm.vsac#0.7.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.7.0  done. Load Package us.nlm.vsac#0.7.0 Load Package hl7.fhir.us.carin-bb#2.0.0 Load Package hl7.fhir.us.davinci-pas#2.1.0 Load Package hl7.fhir.us.carin-bb#2.0.0 Installing hl7.fhir.us.davinci-dtr#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-dtr#2.1.0  done. Installing hl7.fhir.us.davinci-crd#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-crd#2.1.0  done. Load Package hl7.fhir.us.davinci-crd#2.1.0 Load Package hl7.fhir.us.davinci-dtr#2.1.0 Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (01:49.187 / 05:17.097, 767Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Ignore Dependency on Core FHIR hl7.fhir.r4.core#4.0.0, from package 'hl7.fhir.uv.subscriptions-backport.r4#1.1.0' (00:00.024 / 05:17.121, 767Mb) Load Package hl7.fhir.uv.subscriptions-backport.r4#1.1.0 Installing hl7.fhir.uv.tools.r4#0.7.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.7.0  done. Load Package hl7.fhir.uv.tools.r4#0.7.0 Installing hl7.fhir.us.davinci-cdex#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#2.0.0  done. Installing hl7.fhir.us.davinci-cdex#2.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#2.0.0-ballot  done. Installing hl7.fhir.us.davinci-cdex#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#1.1.0  done. Installing hl7.fhir.us.davinci-cdex#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#1.0.0  done. Installing hl7.fhir.us.davinci-cdex#0.2.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#0.2.0  done. Installing hl7.fhir.us.davinci-cdex#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-cdex#0.1.0  done. Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:12.012 / 05:29.133, 885Mb) Load IG (00:00.000 / 05:29.134, 885Mb) Load Content (00:00.001 / 05:29.135, 885Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.171 / 05:29.306, 901Mb) Process Loaded Resources (00:02.301 / 05:31.608, 1Gb) Generating Snapshots (00:00.741 / 05:32.350, 1Gb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/data] as /scratch/repo/input/data loadPrePages from FetchedFile[/scratch/repo/input/intro-notes] as /scratch/repo/input/intro-notes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/davinci-cdex/package-list.json for version check (00:01.901 / 05:34.251, 1Gb) Processing Conformance Resources (00:00.168 / 05:34.419, 1Gb) Checking Language (00:00.000 / 05:34.419, 1Gb) Load Dependency Info (00:00.002 / 05:34.421, 1Gb) Load Info (00:00.002 / 05:34.424, 1Gb) Load Paths (00:00.000 / 05:34.424, 1Gb) Check R4 / R4B (00:00.000 / 05:34.425, 1Gb) Assign Comparison Ids (00:00.079 / 05:34.504, 1Gb) Propagating status (00:00.000 / 05:34.505, 1Gb) Generating Narratives (00:00.061 / 05:34.566, 1Gb) Validating Conformance Resources (00:04.523 / 05:39.089, 1Gb) Check profiles & code systems (00:52.859 / 06:31.949, 2Gb) Check realm rules (00:00.003 / 06:31.953, 2Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:04.625 / 06:36.578, 1Gb) Installing hl7.fhir.us.davinci-pas#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.davinci-pas#1.1.0  done. Installing hl7.fhir.us.core#3.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#3.1.0  done. Installing hl7.terminology.r4#3.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#3.1.0  done. Installing hl7.fhir.us.carin-bb#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.carin-bb#1.1.0  done. Installing hl7.fhir.us.davinci-pas#1.2.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.davinci-pas#1.2.0-ballot  done. Installing hl7.fhir.us.davinci-dtr#1.1.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.davinci-dtr#1.1.0-ballot  done. Installing hl7.fhir.uv.sdc#3.0.0-preview to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0-preview  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Checking for Bundles to sign (01:41.610 / 08:18.189, 2Gb) Validating Resources (00:00.000 / 08:18.190, 2Gb) Processing Provenance Records (00:12.950 / 08:31.140, 3Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 08:31.140, 3Gb) Generate Native Outputs (00:00.287 / 08:31.428, 3Gb) Run Template (00:06.107 / 08:37.535, 4Gb) Generate HTML Outputs (00:03.639 / 08:41.174, 4Gb) Generate Spreadsheets (00:19.380 / 09:00.555, 4Gb) Generate Summaries (00:04.114 / 09:04.669, 5Gb) Generating Summary Outputs (00:00.000 / 09:04.669, 5Gb) DB Cumulative Time invested: 00:00:02.27 Sending Usage Stats to Server (00:27.598 / 09:32.268, 4Gb) ## Memory (MB): Use = 4851, Free = 14156, Total = 19008, Max = 19008 (00:00.006 / 09:32.274, 4Gb) Reclaiming memory... (00:00.000 / 09:32.274, 4Gb) ## Memory (MB): Use = 2250, Free = 16757, Total = 19008, Max = 19008 (00:02.028 / 09:34.303, 2Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.006 / 09:34.310, 2Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.010 / 09:34.320, 2Gb) * A failure to produce a fragment that is already logged in the output above (00:00.001 / 09:34.322, 2Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 09:34.322, 2Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.462 / 09:34.784, 2Gb) Jekyll: Generating... (00:00.000 / 09:34.784, 2Gb) Jekyll: done in 4.765 seconds. (00:04.764 / 09:39.548, 2Gb) Checking Output HTML (00:02.968 / 09:42.517, 3Gb) found 1596 files (00:00.011 / 09:42.528, 3Gb) ........................................ ........................................ ... 1596 html files, 0 pages invalid xhtml (0%) (00:22.400 / 10:04.928, 6Gb) ... 259618 links, 2 broken links (0%) (00:00.000 / 10:04.929, 6Gb) Generate fragment-usage-analysis.csv (00:00.000 / 10:04.929, 6Gb) Build final .zip (00:00.007 / 10:04.937, 6Gb) Final .zip built (00:03.844 / 10:08.782, 6Gb) Installing hl7.fhir.uv.extensions#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#5.1.0-snapshot1  done. Installing hl7.terminology.r5#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r5#5.3.0  done. Built. Times: loading: 00:05.284, generate: 04:55.232, propagating status: 00:00.061, narrative generation: 00:04.522, realm-rules: 00:04.625, previous-version: 01:41.579, jekyll: 00:05.280, validation: 01:05.744 (#93), template: 00:04.005 (#3) (00:20.870 / 10:29.652, 9Gb) Generating QA (00:00.000 / 10:29.652, 9Gb) Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/output/Bundle-cdex-document-digital-sig-example.html', err = 'The html source has duplicate anchor Ids: Patient_970af6c9-5bbd-4067-b6c1-d9b2c823aece' Validation output in /scratch/repo/output/qa.html Errors: 9, Warnings: 69, Info: 24, Broken Links: 2 (00:00.447 / 10:30.100, 9Gb) Finished @ 7/24/25, 9:23 PM. Max Memory Used = 9Gb (00:00.041 / 10:30.141, 9Gb)