INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/davinci-alerts --branch master repo DEBUG:root:Time to deadline 35879.997778 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.126514 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.056937 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.2.0 npm notice Changelog: npm notice Run `npm install -g npm@11.2.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-alerts/ -out /scratch/repo DEBUG:root:Time to deadline 35870.611823 seconds FHIR IG Publisher Version 1.8.23 (Git# ffc7678c1988). Built 2025-04-04T22:01:54.432Z (3 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/davinci-alerts/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, April 8, 2025, 5:30:14 PM Coordinated Universal Time (2025-04-08T17:30:14Z) Build FHIR IG from /scratch/repo (00:00.025 / 00:00.025, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.027, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.029, 97Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.549 / 00:00.579, 37Mb) Load Template from hl7.davinci.template#current (00:00.480 / 00:01.060, 93Mb) Installing hl7.davinci.template#current to the package cache Fetching: Installing hl7.davinci.template#current done. Load Template from hl7.fhir.template#current (00:01.119 / 00:02.179, 158Mb) Installing hl7.fhir.template#current to the package cache Fetching: Installing hl7.fhir.template#current done. Load Template from hl7.base.template#current (00:00.230 / 00:02.410, 158Mb) Installing hl7.base.template#current to the package cache Fetching: Installing hl7.base.template#current done. Load Template from fhir.base.template#current (00:00.186 / 00:02.596, 158Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. Root directory: /scratch/repo (00:03.233 / 00:05.830, 209Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:05.832, 209Mb) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.core#4.0.1 done. Running Terminology Log: /tmp/ohfu-fhir-ig-9495915612206078863.log Connect to Terminology Server at http://tx.fhir.org (00:32.064 / 00:37.896, 905Mb) Installing hl7.fhir.pubpack#0.2.1 to the package cache Fetching: Installing hl7.fhir.pubpack#0.2.1 done. Load Package hl7.fhir.pubpack#0.2.1 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#6.2.0 to the package cache Fetching: Installing hl7.terminology.r4#6.2.0 done. Load Package hl7.terminology.r4#6.2.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#5.2.0 done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.us.core#7.0.0 to the package cache Fetching: Installing hl7.fhir.us.core#7.0.0 done. Installing hl7.terminology.r4#5.5.0 to the package cache Fetching: Installing hl7.terminology.r4#5.5.0 done. Load Package hl7.terminology.r4#5.5.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache Fetching: Installing hl7.fhir.uv.smart-app-launch#2.0.0 done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.18.0 to the package cache Fetching: Installing us.nlm.vsac#0.18.0 done. Load Package us.nlm.vsac#0.18.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache Fetching: Installing hl7.fhir.uv.sdc#3.0.0 done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:32.958 / 01:10.855, 349Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache Fetching: Installing us.cdc.phinvads#0.12.0 done. Load Package us.cdc.phinvads#0.12.0 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#5.1.0 done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.fhir.us.core#7.0.0 Installing hl7.fhir.us.core.v610#6.1.0 to the package cache Fetching: Installing hl7.fhir.us.core.v610#6.1.0 done. Installing hl7.fhir.us.core#6.1.0 to the package cache Fetching: Installing hl7.fhir.us.core#6.1.0 done. Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: Installing hl7.terminology.r4#5.0.0 done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#1.0.0 done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache Fetching: Installing hl7.fhir.uv.bulkdata#2.0.0 done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache Fetching: Installing hl7.fhir.uv.smart-app-launch#2.1.0 done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache Fetching: Installing us.nlm.vsac#0.11.0 done. Load Package us.nlm.vsac#0.11.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache Fetching: Installing ihe.formatcode.fhir#1.1.0 done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package hl7.fhir.us.core.v610#6.1.0 Installing hl7.fhir.us.core.v311#3.1.1 to the package cache Fetching: Installing hl7.fhir.us.core.v311#3.1.1 done. Installing hl7.fhir.us.core#3.1.1 to the package cache Fetching: Installing hl7.fhir.us.core#3.1.1 done. Load Package hl7.fhir.us.core#3.1.1 Load Package hl7.fhir.us.core.v311#3.1.1 Installing hl7.fhir.us.davinci-hrex#1.1.0 to the package cache Fetching: Installing hl7.fhir.us.davinci-hrex#1.1.0 done. Installing hl7.terminology.r4#6.1.0 to the package cache Fetching: Installing hl7.terminology.r4#6.1.0 done. Load Package hl7.terminology.r4#6.1.0 Installing us.nlm.vsac#0.19.0 to the package cache Fetching: Installing us.nlm.vsac#0.19.0 done. Load Package us.nlm.vsac#0.19.0 Load Package hl7.fhir.us.davinci-hrex#1.1.0 Installing hl7.fhir.uv.tools.r4#0.4.1 to the package cache Fetching: Installing hl7.fhir.uv.tools.r4#0.4.1 done. Load Package hl7.fhir.uv.tools.r4#0.4.1 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (01:27.494 / 02:38.349, 997Mb) Load Content (00:00.000 / 02:38.350, 997Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.110 / 02:38.460, 1005Mb) Process Loaded Resources (00:01.038 / 02:39.499, 1Gb) Generating Snapshots (00:00.416 / 02:39.915, 1Gb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/data] as /scratch/repo/input/data loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Fetch http://hl7.org/fhir/us/davinci-alerts/package-list.json for version check (00:01.203 / 02:41.119, 1Gb) Processing Conformance Resources (00:00.226 / 02:41.345, 1Gb) Checking Language (00:00.000 / 02:41.346, 1Gb) Load Dependency Info (00:00.000 / 02:41.346, 1Gb) Load Info (00:00.001 / 02:41.348, 1Gb) Load Paths (00:00.000 / 02:41.348, 1Gb) Check R4 / R4B (00:00.000 / 02:41.349, 1Gb) Assign Comparison Ids (00:00.025 / 02:41.374, 1Gb) Propagating status (00:00.029 / 02:41.403, 1Gb) Generating Narratives (00:00.049 / 02:41.453, 1Gb) Validating Conformance Resources (00:02.568 / 02:44.022, 1Gb) Check profiles & code systems (00:22.366 / 03:06.388, 1Gb) Check realm rules (00:00.002 / 03:06.390, 1Gb) Installing hl7.fhir.us.core#8.0.0-ballot to the package cache Fetching: Installing hl7.fhir.us.core#8.0.0-ballot done. US Core Comparisons Finished Previous Version Comparison (00:03.946 / 03:10.337, 1Gb) Installing hl7.fhir.us.davinci-alerts#1.1.0-preview to the package cache Fetching: Installing hl7.fhir.us.davinci-alerts#1.1.0-preview done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.examples#4.0.1 done. Installing hl7.fhir.uv.extensions#5.1.0-cibuild to the package cache Fetching: Installing hl7.fhir.uv.extensions#5.1.0-cibuild done. FHIR Version mismatch in package hl7.fhir.uv.extensions#5.1.0-cibuild: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.davinci-alerts#1.1.0-preview -> hl7.fhir.us.core#7.0.0) Installing hl7.terminology.r5#5.3.0 to the package cache Fetching: Installing hl7.terminology.r5#5.3.0 done. FHIR Version mismatch in package hl7.terminology.r5#5.3.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.davinci-alerts#1.1.0-preview -> hl7.fhir.us.core#7.0.0 -> hl7.fhir.uv.extensions#5.1.0-cibuild) Installing hl7.fhir.us.davinci-hrex#1.1.0-ballot to the package cache Fetching: Installing hl7.fhir.us.davinci-hrex#1.1.0-ballot done. Installing hl7.terminology.r4#6.0.2 to the package cache Fetching: Installing hl7.terminology.r4#6.0.2 done. Installing hl7.fhir.us.core.3.1.1#3.1.1 to the package cache Fetching: Installing hl7.fhir.us.core.3.1.1#3.1.1 done. Installing hl7.fhir.uv.extensions#5.1.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions#5.1.0 done. FHIR Version mismatch in package hl7.fhir.uv.extensions#5.1.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.davinci-alerts#1.1.0-preview -> hl7.fhir.us.davinci-hrex#1.1.0-ballot) Installing hl7.terminology.r5#5.5.0 to the package cache Fetching: Installing hl7.terminology.r5#5.5.0 done. FHIR Version mismatch in package hl7.terminology.r5#5.5.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.davinci-alerts#1.1.0-preview -> hl7.fhir.us.davinci-hrex#1.1.0-ballot -> hl7.fhir.uv.extensions#5.1.0) Validating Resources (01:20.171 / 04:30.508, 2Gb) Processing Provenance Records (00:10.974 / 04:41.483, 3Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 04:41.483, 3Gb) Generate Native Outputs (00:00.229 / 04:41.713, 3Gb) Run Template (00:03.202 / 04:44.916, 2Gb) Generate HTML Outputs (00:03.197 / 04:48.113, 2Gb) Generate Spreadsheets (01:05.783 / 05:53.897, 12Gb) Generate Summaries (00:03.349 / 05:57.247, 11Gb) Generating Summary Outputs (00:00.000 / 05:57.247, 11Gb) DB Cumulative Time invested: 00:00:00.788 Sending Usage Stats to Server (00:18.806 / 06:16.054, 12Gb) ## Memory (MB): Use = 12475, Free = 6532, Total = 19008, Max = 19008 (00:00.006 / 06:16.060, 12Gb) Reclaiming memory... (00:00.000 / 06:16.060, 12Gb) ## Memory (MB): Use = 10452, Free = 8555, Total = 19008, Max = 19008 (00:05.059 / 06:21.120, 10Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.008 / 06:21.128, 10Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.005 / 06:21.134, 10Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 06:21.134, 10Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 06:21.134, 10Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.431 / 06:21.566, 10Gb) Jekyll: Generating... (00:00.000 / 06:21.566, 10Gb) Jekyll: done in 2.135 seconds. (00:02.134 / 06:23.700, 10Gb) Checking Output HTML (00:02.206 / 06:25.907, 11Gb) found 878 files (00:00.004 / 06:25.911, 11Gb) ......................................... ......................................... ... 878 html files, 0 pages invalid xhtml (0%) (00:09.181 / 06:35.093, 16Gb) ... 145725 links, 0 broken links (0%) (00:00.000 / 06:35.093, 16Gb) Generate fragment-usage-analysis.csv (00:00.000 / 06:35.093, 16Gb) Build final .zip (00:00.006 / 06:35.100, 16Gb) Final .zip built (00:02.036 / 06:37.136, 16Gb) Built. Times: loading: 00:02.995, generate: 04:03.677, propagating status: 00:00.049, narrative generation: 00:02.568, realm-rules: 00:03.946, previous-version: 01:20.149, jekyll: 00:02.599, validation: 00:33.207 (#24), template: 00:03.510 (#3) (00:07.900 / 06:45.036, 10Gb) Generating QA (00:00.000 / 06:45.037, 10Gb) Validation output in /scratch/repo/output/qa.html Errors: 3, Warnings: 0, Info: 0, Broken Links: 0 (00:08.724 / 06:53.762, 17Gb) Finished. Max Memory Used = 17Gb (00:00.009 / 06:53.771, 17Gb)