INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/cqf-recommendations --branch master repo DEBUG:root:Time to deadline 35879.997428 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35867.383773 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35866.114043 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 120 packages in 5s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.9.1 npm notice Changelog: npm notice Run `npm install -g npm@10.9.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/cqf-recommendations/ -out /scratch/repo DEBUG:root:Time to deadline 35860.826597 seconds FHIR IG Publisher Version 1.7.5 (Git# 2ec44e6c46a5). Built 2024-11-22T15:37:50.312Z (3 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/cqf-recommendations/ -out /scratch/repo Start Clock @ Tuesday, November 26, 2024, 6:40:04 AM Coordinated Universal Time (2024-11-26T06:40:04Z) Build FHIR IG from /scratch/repo (00:00.028 / 00:00.029, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.005 / 00:00.033, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.037, 89Mb) Run Sushi on /scratch/repo (00:00.008 / 00:00.046, 89Mb) Sushi: info Running SUSHI v3.12.1 (implements FHIR Shorthand specification v3.0.0) (00:00.658 / 00:00.705, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.705, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.706, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.706, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.706, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.970 / 00:01.678, 113Mb) Sushi: info Importing FSH text... (00:00.173 / 00:01.851, 113Mb) Sushi: info Preprocessed 574 documents with 137 aliases. (00:01.487 / 00:03.339, 113Mb) Sushi: info Imported 143 definitions and 438 instances. (00:01.198 / 00:04.537, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:04.540, 113Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.027 / 00:04.567, 113Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.194 / 00:04.762, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.019 / 00:04.781, 113Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.111 / 00:04.893, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.1.0... (00:00.530 / 00:05.423, 113Mb) Sushi: info Did not find hl7.terminology.r4#6.1.0 in /home/fhiruser/.fhir/packages. (00:00.033 / 00:05.457, 113Mb) Sushi: info Downloading hl7.terminology.r4#6.1.0... https://packages.fhir.org/hl7.terminology.r4/6.1.0 (00:00.000 / 00:05.457, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.1.0 (00:02.191 / 00:07.649, 113Mb) Sushi: info Loaded package hl7.terminology.r4#6.1.0 (00:02.205 / 00:09.854, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.467 / 00:10.322, 113Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.534 / 00:10.857, 113Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:10.857, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:01.884 / 00:12.741, 113Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.433 / 00:14.175, 113Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r5 (00:00.000 / 00:14.176, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r5.core#5.0.0... (00:00.000 / 00:14.176, 113Mb) Sushi: info Did not find hl7.fhir.r5.core#5.0.0 in /home/fhiruser/.fhir/packages. (00:00.000 / 00:14.176, 113Mb) Sushi: info Downloading hl7.fhir.r5.core#5.0.0... https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.000 / 00:14.177, 113Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:03.474 / 00:17.651, 113Mb) Sushi: info Loaded package hl7.fhir.r5.core#5.0.0 (00:02.153 / 00:19.805, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:19.805, 113Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.756 / 00:20.562, 113Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:20.563, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.151 / 00:23.714, 113Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:02.949 / 00:26.663, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.072 / 00:26.736, 113Mb) Sushi: info Converted 127 FHIR StructureDefinitions. (00:12.346 / 00:39.083, 121Mb) Sushi: info Converted 8 FHIR CodeSystems. (00:01.424 / 00:40.507, 121Mb) Sushi: info Converted 8 FHIR ValueSets. (00:01.141 / 00:41.648, 121Mb) Sushi: info Converted 438 FHIR instances. (00:47.769 / 01:29.418, 129Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 01:29.419, 129Mb) Sushi: info Exported 572 FHIR resources as JSON. (00:00.694 / 01:30.114, 129Mb) Sushi: info Assembling Implementation Guide sources... (00:00.020 / 01:30.134, 129Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.uv.cpg.json (00:00.031 / 01:30.166, 129Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:30.166, 129Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 01:30.168, 129Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:30.169, 129Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:30.169, 129Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:30.169, 129Mb) Sushi: | | 99 | 28 | 0 | 0 | | (00:00.000 / 01:30.170, 129Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:30.170, 129Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:30.170, 129Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:30.170, 129Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:30.171, 129Mb) Sushi: | | 8 | 8 | 438 | | (00:00.000 / 01:30.171, 129Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:30.171, 129Mb) Sushi: | | (00:00.000 / 01:30.171, 129Mb) Sushi: =================================================================== (00:00.000 / 01:30.172, 129Mb) Sushi: | Tank you very much! 0 Errors 0 Warnings | (00:00.000 / 01:30.172, 129Mb) Sushi: =================================================================== (00:00.000 / 01:30.172, 129Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.866 / 01:31.039, 37Mb) Load Template from hl7.fhir.template#current (00:00.839 / 01:31.879, 77Mb) Installing hl7.fhir.template#current to the package cache Fetching: Installing hl7.fhir.template#current done. Load Template from hl7.base.template#current (00:01.465 / 01:33.344, 149Mb) Installing hl7.base.template#current to the package cache Fetching: Installing hl7.base.template#current done. Load Template from fhir.base.template#current (00:00.197 / 01:33.542, 149Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/repo/template/onLoad-ig-working.xml to /scratch/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/repo (00:04.841 / 01:38.384, 184Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 01:38.386, 184Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-18008027095210083829.log Connect to Terminology Server at http://tx.fhir.org (00:30.111 / 02:08.497, 606Mb) Installing hl7.fhir.pubpack#0.1.9 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.9 done. Load Package hl7.fhir.pubpack#0.1.9 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.1.0 Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing hl7.fhir.uv.tools.r4#0.3.0 to the package cache Fetching: Installing hl7.fhir.uv.tools.r4#0.3.0 done. Load Package hl7.fhir.uv.tools.r4#0.3.0 Load R5 Specials Initialization complete (00:08.794 / 02:17.292, 664Mb) Load Content (00:00.000 / 02:17.292, 664Mb) Using en-US as the default narrative language. (no language information in Implementation Guide or command line) (00:00.251 / 02:17.543, 704Mb) Translating CQL source (00:00.036 / 02:17.580, 705Mb) Translating CQL source in folder /scratch/repo/./input/cql (00:00.000 / 02:17.580, 705Mb) Translating CQL source in file /scratch/repo/./input/cql/CollectInformation.cql (00:00.049 / 02:17.630, 706Mb) CQL translation completed successfully. (00:02.869 / 02:20.500, 928Mb) Translating CQL source in file /scratch/repo/./input/cql/StopMedication.cql (00:00.000 / 02:20.500, 928Mb) CQL translation completed successfully. (00:00.447 / 02:20.948, 984Mb) Translating CQL source in file /scratch/repo/./input/cql/EnrollPatient.cql (00:00.000 / 02:20.948, 984Mb) CQL translation completed successfully. (00:00.304 / 02:21.252, 1Gb) Translating CQL source in file /scratch/repo/./input/cql/ReportFlag.cql (00:00.000 / 02:21.253, 1Gb) CQL translation completed successfully. (00:00.230 / 02:21.483, 1Gb) Translating CQL source in file /scratch/repo/./input/cql/RecommendImmunization.cql (00:00.000 / 02:21.483, 1Gb) CQL translation completed successfully. (00:00.325 / 02:21.809, 307Mb) Translating CQL source in file /scratch/repo/./input/cql/SendMessage.cql (00:00.000 / 02:21.809, 307Mb) CQL translation completed successfully. (00:00.175 / 02:21.985, 371Mb) Translating CQL source in file /scratch/repo/./input/cql/GenerateReport.cql (00:00.000 / 02:21.985, 371Mb) CQL translation completed successfully. (00:00.176 / 02:22.161, 427Mb) Translating CQL source in file /scratch/repo/./input/cql/ResumeMedication.cql (00:00.000 / 02:22.161, 427Mb) CQL translation completed successfully. (00:00.161 / 02:22.322, 475Mb) Translating CQL source in file /scratch/repo/./input/cql/ProposeDiagnosis.cql (00:00.000 / 02:22.322, 475Mb) CQL translation completed successfully. (00:00.165 / 02:22.488, 531Mb) Translating CQL source in file /scratch/repo/./input/cql/RecordInference.cql (00:00.000 / 02:22.488, 531Mb) CQL translation completed successfully. (00:00.173 / 02:22.662, 587Mb) Translating CQL source in file /scratch/repo/./input/cql/DispenseMedication.cql (00:00.000 / 02:22.662, 587Mb) CQL translation completed successfully. (00:00.270 / 02:22.932, 643Mb) Translating CQL source in file /scratch/repo/./input/cql/CHF.cql (00:00.000 / 02:22.932, 643Mb) CQL translation completed successfully. (00:00.363 / 02:23.295, 723Mb) Translating CQL source in file /scratch/repo/./input/cql/AdministerMedication.cql (00:00.000 / 02:23.296, 723Mb) CQL translation completed successfully. (00:00.242 / 02:23.538, 779Mb) Translating CQL source in file /scratch/repo/./input/cql/DoNotSendMessage.cql (00:00.000 / 02:23.539, 779Mb) CQL translation completed successfully. (00:00.219 / 02:23.758, 843Mb) Translating CQL source in file /scratch/repo/./input/cql/DoNotCollectInformation.cql (00:00.000 / 02:23.758, 843Mb) CQL translation completed successfully. (00:00.212 / 02:23.971, 899Mb) Translating CQL source in file /scratch/repo/./input/cql/OrderMedication.cql (00:00.000 / 02:23.971, 899Mb) CQL translation completed successfully. (00:00.217 / 02:24.188, 955Mb) Translating CQL source in file /scratch/repo/./input/cql/DocumentMedication.cql (00:00.000 / 02:24.188, 955Mb) CQL translation completed successfully. (00:00.211 / 02:24.399, 1019Mb) Translating CQL source in file /scratch/repo/./input/cql/OrderService.cql (00:00.000 / 02:24.399, 1019Mb) CQL translation completed successfully. (00:00.205 / 02:24.605, 1Gb) Translating CQL source in file /scratch/repo/./input/cql/HoldMedication.cql (00:00.000 / 02:24.605, 1Gb) CQL translation completed successfully. (00:00.307 / 02:24.913, 317Mb) Translating CQL source in file /scratch/repo/./input/cql/RecordDetectedIssue.cql (00:00.000 / 02:24.913, 317Mb) CQL translation completed successfully. (00:00.174 / 02:25.087, 373Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/includes/future-state-tables] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/includes/process-patterns] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/includes/profile-tables] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/includes/opg-recommendation-4] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/data] as /scratch/repo/input/data loadPrePages from FetchedFile[/scratch/repo/input/intro-notes] as /scratch/repo/input/intro-notes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Fetch http://hl7.org/fhir/uv/cpg/package-list.json for version check (00:04.726 / 02:29.813, 861Mb) Processing Conformance Resources (00:00.268 / 02:30.082, 917Mb) Load Dependency Info (00:00.015 / 02:30.097, 917Mb) Load Info (00:00.004 / 02:30.101, 917Mb) Load Resources (00:00.001 / 02:30.103, 921Mb) Load Paths (00:03.136 / 02:33.239, 1Gb) Generating Snapshots (00:00.001 / 02:33.241, 1Gb) Check R4 / R4B (00:06.019 / 02:39.260, 934Mb) Assign Comparison Ids (00:00.133 / 02:39.394, 958Mb) Propagating status (00:00.001 / 02:39.395, 958Mb) Generating Narratives (00:00.000 / 02:39.395, 958Mb) Validating Conformance Resources (00:06.774 / 02:46.170, 1Gb) Installing hl7.terminology.r4#5.3.0 to the package cache Fetching: Installing hl7.terminology.r4#5.3.0 done. Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#1.0.0 done. Unable to check package currency: hl7.fhir.uv.cpg: hl7.fhir.uv.cpg Installing hl7.fhir.uv.cpg#current to the package cache Fetching: Installing hl7.fhir.uv.cpg#current done. Check profiles & code systems (00:40.670 / 03:26.840, 1Gb) Check realm rules (00:00.018 / 03:26.859, 1Gb) Previous Version Comparison (00:00.001 / 03:26.860, 1Gb) Installing hl7.fhir.uv.cpg#2.0.0-ballot to the package cache Fetching: 2024-11-26 06:43:32.372 [main] INFO o.h.f.u.npm.BasePackageCacheManager [BasePackageCacheManager.java:92] Failed to resolve package hl7.fhir.uv.cpg#2.0.0-ballot from server: https://packages.fhir.org (Not Found) Installing hl7.fhir.uv.cpg#2.0.0-ballot done. Installing hl7.fhir.uv.extensions#5.1.0-ballot1 to the package cache Fetching: 2024-11-26 06:43:40.603 [main] INFO o.h.f.u.npm.BasePackageCacheManager [BasePackageCacheManager.java:92] Failed to resolve package hl7.fhir.uv.extensions#5.1.0-ballot1 from server: https://packages.fhir.org (Not Found) Installing hl7.fhir.uv.extensions#5.1.0-ballot1 done. FHIR Version mismatch in package hl7.fhir.uv.extensions#5.1.0-ballot1: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.uv.cpg#2.0.0-ballot) Installing hl7.terminology.r5#5.3.0 to the package cache Fetching: Installing hl7.terminology.r5#5.3.0 done. FHIR Version mismatch in package hl7.terminology.r5#5.3.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.uv.cpg#2.0.0-ballot -> hl7.fhir.uv.extensions#5.1.0-ballot1) Validating Resources (00:22.436 / 03:49.296, 1Gb) Processing Provenance Records (00:06.378 / 03:55.675, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 03:55.676, 2Gb) Generate Native Outputs (00:00.440 / 03:56.116, 1Gb) Run Template (00:51.579 / 04:47.695, 3Gb) onGenerate.checkVersions: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/versions.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 19 files to /scratch/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.1.xml to /scratch/repo/template/onGenerate-ig-working.2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.groupSort.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.2.xml to /scratch/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/properties.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-cpg.xml [get] To: /scratch/repo/input-cache/jiraspec.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-cpg.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/FHIR-cpg.xml onGenerate.jira.packagelistcopy: onGenerate.jira.packagelistget: [get] Getting: http://hl7.org/fhir/uv/cpg/package-list.json [get] To: /scratch/repo/template/onGenerate.jira.workingpackage-list.json onGenerate.jira.packagelistProcess: [xslt] Processing /scratch/repo/template/onGenerate.jira.package-list.tmp.xml to /scratch/repo/template/onGenerate.jira.package-list.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.package-list.xslt onGenerate.jira.packagelistSkip: onGenerate.jira.pubrequestProcess: [xslt] Processing /scratch/repo/template/onGenerate.jira.pubrequest.tmp.xml to /scratch/repo/template/onGenerate.jira.pubrequest.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.pubrequest.xslt onGenerate.jira.pubrequestSkip: onGenerate.jira.generate: [xslt] Processing /scratch/repo/template/onGenerate.jira.tmp.xml to /scratch/repo/template/onGenerate.jira.tmp2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.process-pkg-list.xslt [xslt] Processing /scratch/repo/template/onGenerate.jira.tmp2.xml to /scratch/repo/template/onGenerate.jira.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.jira.xslt [xslt] Processing /scratch/repo/template/onGenerate.jira.xml to /scratch/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/repo/input-cache/jiraspec.xml to /scratch/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.normalize.xslt [copy] Copying 1 file to /scratch/repo onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (00:04.327 / 04:52.022, 3Gb) Generate HTML Outputs (00:00.001 / 04:52.024, 3Gb) ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... Generate Summaries (01:28.579 / 06:20.604, 10Gb) Generating Summary Outputs (00:00.000 / 06:20.604, 10Gb) Table of contents has a section with more than 222 entries. Collapsing will not work reliably DB Cumulative Time invested: 00:00:04.162 Sending Usage Stats to Server (00:15.370 / 06:35.975, 2Gb) ## Memory (MB): Use = 2454, Free = 16553, Total = 19008, Max = 19008 (00:00.014 / 06:35.989, 2Gb) Reclaiming memory... (00:00.000 / 06:35.989, 2Gb) ## Memory (MB): Use = 1738, Free = 17269, Total = 19008, Max = 19008 (00:02.119 / 06:38.109, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 06:38.110, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 06:38.110, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 06:38.110, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 06:38.110, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.511 / 06:38.622, 1Gb) Jekyll: Generating... (00:00.000 / 06:38.622, 1Gb) Jekyll: done in 19.551 seconds. (00:19.550 / 06:58.173, 1Gb) onCheck.extend: onCheck: Checking Output HTML (00:17.609 / 07:15.783, 5Gb) found 6476 files (00:00.036 / 07:15.819, 5Gb) ........................................ ......................Sending usage stats failed: Connection timed out .................. ... 6476 html files, 0 pages invalid xhtml (0%) (01:56.690 / 09:12.509, 6Gb) ... 1436011 links, 25 broken links (0%) (00:00.000 / 09:12.510, 6Gb) Generate fragment-usage-analysis.csv (00:00.000 / 09:12.510, 6Gb) Build final .zip (00:00.007 / 09:12.517, 6Gb) Final .zip built (00:16.243 / 09:28.760, 6Gb) Built. Times: loading: 00:12.788, generate: 07:04.441, narrative generation: 00:06.774, realm-rules: 00:00.001, previous-version: 00:22.313, jekyll: 00:20.175, validation: 00:45.102 (#574), template: 00:04.336 (#3) (00:05.787 / 09:34.548, 8Gb) Generating QA (00:00.000 / 09:34.548, 8Gb) Validation output in /scratch/repo/output/qa.html Errors: 3, Warnings: 0, Info: 0, Broken Links: 26 (02:50.053 / 12:24.602, 3Gb) Finished. Max Memory Used = 10Gb (00:00.094 / 12:24.696, 3Gb)