INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/cimi-vital-signs --branch master repo DEBUG:root:Time to deadline 35879.997386 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.479508 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.359399 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 128 packages in 6s 11 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 10.9.0 npm notice Changelog: npm notice Run `npm install -g npm@10.9.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/cimi-vital-signs/ -out /scratch/repo DEBUG:root:Time to deadline 35872.36626 seconds FHIR IG Publisher Version 1.6.29 (Git# 7b9937a4c22a). Built 2024-10-08T16:17:01.152Z (31 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/cimi-vital-signs/ -out /scratch/repo Start Clock @ Wednesday, October 9, 2024, 11:55:22 PM Coordinated Universal Time (2024-10-09T23:55:22Z) Build FHIR IG from /scratch/repo (00:00.030 / 00:00.031, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.035, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.039, 89Mb) Run Sushi on /scratch/repo (00:00.006 / 00:00.045, 89Mb) Sushi: info Running SUSHI v3.11.1 (implements FHIR Shorthand specification v3.0.0-ballot) (00:00.721 / 00:00.767, 97Mb) Sushi: info Arguments: (00:00.000 / 00:00.767, 97Mb) Sushi: info --require-latest (00:00.000 / 00:00.768, 97Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.768, 97Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.769, 97Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.962 / 00:01.732, 97Mb) Sushi: info Importing FSH text... (00:00.192 / 00:01.924, 97Mb) Sushi: info Preprocessed 52 documents with 61 aliases. (00:00.356 / 00:02.280, 97Mb) Sushi: info Imported 56 definitions and 18 instances. (00:00.042 / 00:02.322, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:02.325, 97Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.029 / 00:02.354, 97Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.323 / 00:02.677, 97Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.027 / 00:02.704, 97Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.115 / 00:02.819, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#6.0.2... (00:00.545 / 00:03.364, 97Mb) Sushi: info Did not find hl7.terminology.r4#6.0.2 in /home/fhiruser/.fhir/packages. (00:00.035 / 00:03.399, 97Mb) Sushi: info Downloading hl7.terminology.r4#6.0.2... https://packages.fhir.org/hl7.terminology.r4/6.0.2 (00:00.000 / 00:03.400, 97Mb) Sushi: info Downloaded hl7.terminology.r4#6.0.2 (00:02.328 / 00:05.729, 97Mb) Sushi: info Loaded package hl7.terminology.r4#6.0.2 (00:02.367 / 00:08.096, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions.r4#5.1.0... (00:00.451 / 00:08.547, 97Mb) Sushi: info Did not find hl7.fhir.uv.extensions.r4#5.1.0 in /home/fhiruser/.fhir/packages. (00:00.556 / 00:09.104, 97Mb) Sushi: info Downloading hl7.fhir.uv.extensions.r4#5.1.0... https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.1.0 (00:00.000 / 00:09.104, 97Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.1.0 (00:02.004 / 00:11.109, 97Mb) Sushi: info Loaded package hl7.fhir.uv.extensions.r4#5.1.0 (00:01.531 / 00:12.640, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.000 / 00:12.641, 97Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:00.788 / 00:13.429, 97Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:13.429, 97Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.843 / 00:16.273, 97Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:03.160 / 00:19.434, 97Mb) Sushi: info Converting FSH to FHIR resources... (00:00.077 / 00:19.511, 97Mb) Sushi: info Converted 22 FHIR StructureDefinitions. (00:02.800 / 00:22.312, 97Mb) Sushi: info Converted 3 FHIR CodeSystems. (00:00.047 / 00:22.359, 97Mb) Sushi: info Converted 31 FHIR ValueSets. (00:00.905 / 00:23.264, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.624 / 00:23.889, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:23.890, 97Mb) Sushi: Line: 131 (00:00.000 / 00:23.890, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:23.890, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:23.891, 97Mb) Sushi: Line: 132 (00:00.000 / 00:23.891, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.090 / 00:23.982, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:23.982, 97Mb) Sushi: Line: 144 (00:00.000 / 00:23.983, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:23.983, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:23.983, 97Mb) Sushi: Line: 145 (00:00.000 / 00:23.983, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.117 / 00:24.101, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.101, 97Mb) Sushi: Line: 159 (00:00.000 / 00:24.101, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:24.102, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.102, 97Mb) Sushi: Line: 160 (00:00.000 / 00:24.102, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.110 / 00:24.213, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.214, 97Mb) Sushi: Line: 178 (00:00.000 / 00:24.214, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:24.214, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.214, 97Mb) Sushi: Line: 179 (00:00.000 / 00:24.215, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.091 / 00:24.306, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.307, 97Mb) Sushi: Line: 192 (00:00.000 / 00:24.307, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:24.308, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.308, 97Mb) Sushi: Line: 193 (00:00.000 / 00:24.308, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.092 / 00:24.401, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.401, 97Mb) Sushi: Line: 211 (00:00.000 / 00:24.401, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:24.401, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.402, 97Mb) Sushi: Line: 212 (00:00.000 / 00:24.402, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.126 / 00:24.529, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.529, 97Mb) Sushi: Line: 232 (00:00.000 / 00:24.529, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:24.529, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.530, 97Mb) Sushi: Line: 233 (00:00.000 / 00:24.530, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.247 / 00:24.778, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.778, 97Mb) Sushi: Line: 280 (00:00.000 / 00:24.778, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:24.779, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.779, 97Mb) Sushi: Line: 281 (00:00.000 / 00:24.779, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.114 / 00:24.894, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.895, 97Mb) Sushi: Line: 297 (00:00.000 / 00:24.895, 97Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:24.895, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.895, 97Mb) Sushi: Line: 298 (00:00.000 / 00:24.896, 97Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.013 / 00:24.909, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.910, 97Mb) Sushi: Line: 307 (00:00.000 / 00:24.910, 97Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 00:24.910, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:24.910, 97Mb) Sushi: Line: 308 (00:00.000 / 00:24.910, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.112 / 00:25.024, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.024, 97Mb) Sushi: Line: 325 (00:00.000 / 00:25.024, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.012 / 00:25.037, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.037, 97Mb) Sushi: Line: 326 (00:00.000 / 00:25.038, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.013 / 00:25.051, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.052, 97Mb) Sushi: Line: 327 (00:00.000 / 00:25.052, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.012 / 00:25.064, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.065, 97Mb) Sushi: Line: 328 (00:00.000 / 00:25.065, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.012 / 00:25.078, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.078, 97Mb) Sushi: Line: 329 (00:00.000 / 00:25.078, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.014 / 00:25.093, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.093, 97Mb) Sushi: Line: 330 (00:00.000 / 00:25.093, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.012 / 00:25.106, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.107, 97Mb) Sushi: Line: 331 (00:00.000 / 00:25.107, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.013 / 00:25.120, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.121, 97Mb) Sushi: Line: 332 (00:00.000 / 00:25.121, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.013 / 00:25.135, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.135, 97Mb) Sushi: Line: 333 (00:00.000 / 00:25.135, 97Mb) Sushi: warn Sliced element Observation.hasMember is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.011 / 00:25.147, 97Mb) Sushi: File: /scratch/repo/input/fsh/examples.fsh (00:00.000 / 00:25.148, 97Mb) Sushi: Line: 334 (00:00.000 / 00:25.148, 97Mb) Sushi: info Converted 18 FHIR instances. (00:00.050 / 00:25.198, 97Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.004 / 00:25.202, 97Mb) Sushi: info Exported 74 FHIR resources as JSON. (00:00.173 / 00:25.376, 97Mb) Sushi: info Assembling Implementation Guide sources... (00:00.004 / 00:25.381, 97Mb) Sushi: info Generated ImplementationGuide-CIMI-Vital-Signs.json (00:00.011 / 00:25.392, 97Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:25.392, 97Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 00:25.394, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.395, 97Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:25.395, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:25.395, 97Mb) Sushi: | | 15 | 7 | 0 | 0 | | (00:00.000 / 00:25.395, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.395, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.395, 97Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:25.395, 97Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:25.396, 97Mb) Sushi: | | 31 | 3 | 18 | | (00:00.000 / 00:25.396, 97Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.396, 97Mb) Sushi: | | (00:00.000 / 00:25.396, 97Mb) Sushi: =================================================================== (00:00.000 / 00:25.396, 97Mb) Sushi: | You should mullet over. 0 Errors 30 Warnings | (00:00.000 / 00:25.396, 97Mb) Sushi: =================================================================== (00:00.000 / 00:25.396, 97Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.858 / 00:26.255, 37Mb) Load Template from hl7.fhir.template#current (00:00.763 / 00:27.018, 69Mb) Installing hl7.fhir.template#current to the package cache Fetching: Installing hl7.fhir.template#current done. Load Template from hl7.base.template#current (00:01.557 / 00:28.576, 133Mb) Installing hl7.base.template#current to the package cache Fetching: Installing hl7.base.template#current done. Load Template from fhir.base.template#current (00:00.227 / 00:28.803, 133Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/repo/template/onLoad-ig-working.xml to /scratch/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/repo (00:05.236 / 00:34.040, 135Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:34.043, 135Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-3061800752378121870.log Connect to Terminology Server at http://tx.fhir.org (00:34.792 / 01:08.835, 579Mb) Installing hl7.fhir.pubpack#0.1.8 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.8 done. Load Package hl7.fhir.pubpack#0.1.8 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.0.2 Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing hl7.fhir.uv.tools#0.2.0 to the package cache Fetching: Installing hl7.fhir.uv.tools#0.2.0 done. Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.tools' is from version 5.0.0 (will try to run anyway) (00:09.096 / 01:17.932, 1Gb) Load Package hl7.fhir.uv.tools#0.2.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (00:04.526 / 01:22.459, 859Mb) Load Content (00:00.000 / 01:22.459, 859Mb) Using en-US as the default narrative language. (no language information in Implementation Guide or command line) (00:00.094 / 01:22.553, 866Mb) loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Fetch http://hl7.org/fhir/us/vitals/package-list.json for version check (00:01.146 / 01:23.700, 938Mb) Processing Conformance Resources (00:00.217 / 01:23.917, 946Mb) Load Dependency Info (00:00.002 / 01:23.920, 946Mb) Load Info (00:00.001 / 01:23.922, 946Mb) Load Resources (00:00.001 / 01:23.923, 949Mb) Load Paths (00:00.510 / 01:24.434, 1Gb) Generating Snapshots (00:00.000 / 01:24.434, 1Gb) Check R4 / R4B (00:02.114 / 01:26.549, 692Mb) Assign Comparison Ids (00:00.034 / 01:26.584, 700Mb) Propagating status (00:00.000 / 01:26.584, 700Mb) Generating Narratives (00:00.000 / 01:26.584, 700Mb) Validating Conformance Resources (00:05.695 / 01:32.279, 668Mb) Check profiles & code systems (00:11.558 / 01:43.838, 1Gb) Check realm rules (00:00.008 / 01:43.846, 1Gb) Installing hl7.fhir.us.core#7.0.0 to the package cache Fetching: 2024-10-09 23:57:07.324 [main] INFO o.h.f.u.npm.BasePackageCacheManager [BasePackageCacheManager.java:92] Failed to resolve package hl7.fhir.us.core#7.0.0 from server: https://packages.fhir.org (Not Found) Installing hl7.fhir.us.core#7.0.0 done. US Core Comparisons Finished Previous Version Comparison (00:38.648 / 02:22.494, 3Gb) Installing hl7.fhir.us.vitals#1.0.0 to the package cache Fetching: Installing hl7.fhir.us.vitals#1.0.0 done. Installing hl7.terminology.r4#3.1.0 to the package cache Fetching: Installing hl7.terminology.r4#3.1.0 done. Installing hl7.fhir.us.core#3.1.1 to the package cache Fetching: Installing hl7.fhir.us.core#3.1.1 done. Validating Resources (00:37.524 / 03:00.019, 6Gb) Processing Provenance Records (00:05.677 / 03:05.696, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 03:05.697, 1Gb) Generate Native Outputs (00:00.246 / 03:05.944, 1Gb) Run Template (00:11.162 / 03:17.106, 2Gb) onGenerate.checkVersions: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/versions.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 19 files to /scratch/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.1.xml to /scratch/repo/template/onGenerate-ig-working.2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.groupSort.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.2.xml to /scratch/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/properties.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-vitals.xml [get] To: /scratch/repo/input-cache/jiraspec.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-vitals.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/FHIR-us-vitals.xml onGenerate.jira.packagelistcopy: [copy] Copying 1 file to /scratch/repo/template onGenerate.jira.packagelistget: onGenerate.jira.packagelistProcess: [xslt] Processing /scratch/repo/template/onGenerate.jira.package-list.tmp.xml to /scratch/repo/template/onGenerate.jira.package-list.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.package-list.xslt onGenerate.jira.packagelistSkip: onGenerate.jira.pubrequestProcess: onGenerate.jira.pubrequestSkip: onGenerate.jira.generate: [xslt] Processing /scratch/repo/template/onGenerate.jira.tmp.xml to /scratch/repo/template/onGenerate.jira.tmp2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.process-pkg-list.xslt [xslt] Processing /scratch/repo/template/onGenerate.jira.tmp2.xml to /scratch/repo/template/onGenerate.jira.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.jira.xslt [xslt] Processing /scratch/repo/template/onGenerate.jira.xml to /scratch/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/repo/input-cache/jiraspec.xml to /scratch/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.normalize.xslt [copy] Copying 1 file to /scratch/repo onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (00:02.454 / 03:19.560, 2Gb) Generate HTML Outputs (00:00.000 / 03:19.561, 2Gb) ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... Generate Summaries (00:30.663 / 03:50.225, 1Gb) Generating Summary Outputs (00:00.047 / 03:50.272, 1Gb) DB Cumulative Time invested: 00:00:02.68 Sending Usage Stats to Server (00:06.897 / 03:57.169, 1Gb) ## Memory (MB): Use = 1672, Free = 17335, Total = 19008, Max = 19008 (00:00.010 / 03:57.180, 1Gb) Reclaiming memory... (00:00.000 / 03:57.180, 1Gb) ## Memory (MB): Use = 989, Free = 18018, Total = 19008, Max = 19008 (00:01.299 / 03:58.479, 1005Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.004 / 03:58.484, 1005Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 03:58.484, 1005Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 03:58.485, 1005Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 03:58.485, 1005Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.597 / 03:59.082, 1021Mb) Jekyll: Generating... (00:00.000 / 03:59.083, 1021Mb) Jekyll: done in 4.737 seconds. (00:04.736 / 04:03.819, 1Gb) Checking Output HTML (00:04.801 / 04:08.621, 2Gb) found 1369 files (00:00.008 / 04:08.629, 2Gb) ........................................ ........................................ ... 1369 html files, 0 pages invalid xhtml (0%) (00:25.647 / 04:34.277, 8Gb) ... 308702 links, 0 broken links (0%) (00:00.000 / 04:34.277, 8Gb) Generate fragment-usage-analysis.csv (00:00.000 / 04:34.277, 8Gb) Build final .zip (00:00.007 / 04:34.285, 8Gb) Final .zip built (00:11.076 / 04:45.361, 8Gb) Built. Times: loading: 00:01.457, generate: 03:23.733, narrative generation: 00:05.694, realm-rules: 00:38.648, previous-version: 00:37.486, jekyll: 00:05.411, validation: 00:17.129 (#75), template: 00:02.454 (#3) (00:02.453 / 04:47.815, 9Gb) Generating QA (00:00.000 / 04:47.815, 9Gb) Validation output in /scratch/repo/output/qa.html Errors: 124, Warnings: 76, Info: 11, Broken Links: 0 (00:03.508 / 04:51.324, 10Gb) Finished. Max Memory Used = 10Gb (00:00.016 / 04:51.341, 10Gb)