INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/ccda-on-fhir --branch master repo DEBUG:root:Time to deadline 35879.996813 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35875.454208 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35874.030392 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 8s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.2 npm notice Changelog: npm notice Run `npm install -g npm@11.5.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/ccda-on-fhir/ -out /scratch/repo DEBUG:root:Time to deadline 35865.102032 seconds FHIR IG Publisher Version 2.0.12 (Git# 1e7f5af908a3). Built 2025-07-27T20:11:20.240Z (4 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/ccda-on-fhir/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, July 31, 2025, 9:42:42 PM Coordinated Universal Time (2025-07-31T21:42:42Z) Build FHIR IG from /scratch/repo (00:00.045 / 00:00.046, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.005 / 00:00.051, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.005 / 00:00.056, 97Mb) Load Template from hl7.fhir.template#current (00:02.040 / 00:02.097, 86Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:01.963 / 00:04.060, 150Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir.base.template#current (00:00.347 / 00:04.408, 150Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:07.189 / 00:11.598, 150Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.004 / 00:11.602, 150Mb) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-18349010822865103101.html Connect to Terminology Server at http://tx.fhir.org (01:01.841 / 01:13.443, 959Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Load Package hl7.terminology.r4#6.5.0 Dependency 'hl7.fhir.us.core' has no id, so can't be referred to in markdown in the IG (00:06.918 / 01:20.361, 459Mb) Installing hl7.fhir.us.core#4.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#4.0.0  done. Installing hl7.fhir.uv.bulkdata#1.0.1 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#1.0.1  done. Load Package hl7.fhir.uv.bulkdata#1.0.1 Installing us.nlm.vsac#0.3.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.3.0  done. Load Package us.nlm.vsac#0.3.0 Load Package hl7.fhir.us.core#4.0.0 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing hl7.fhir.uv.tools.r4#0.7.1 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.7.1  done. Load Package hl7.fhir.uv.tools.r4#0.7.1 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (01:58.019 / 03:18.381, 511Mb) Load IG (00:00.000 / 03:18.382, 511Mb) Load Content (00:00.001 / 03:18.383, 511Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.145 / 03:18.529, 527Mb) Process Loaded Resources (00:01.745 / 03:20.274, 639Mb) Generating Snapshots (00:00.876 / 03:21.150, 719Mb) Process Additional Loaded Resources (00:02.960 / 03:24.111, 390Mb) Generating Snapshots (00:01.272 / 03:25.384, 718Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/ccda/package-list.json for version check (00:03.562 / 03:28.946, 1Gb) Processing Conformance Resources (00:00.169 / 03:29.116, 1Gb) Checking Language (00:00.000 / 03:29.116, 1Gb) Load Dependency Info (00:00.005 / 03:29.123, 1Gb) Load Info (00:00.003 / 03:29.126, 1Gb) Load Paths (00:00.001 / 03:29.127, 1Gb) Check R4 / R4B (00:00.001 / 03:29.128, 1Gb) Assign Comparison Ids (00:00.233 / 03:29.361, 1Gb) Propagating status (00:00.000 / 03:29.362, 1Gb) Generating Narratives (00:00.414 / 03:29.776, 550Mb) Validating Conformance Resources (03:52.081 / 07:21.858, 9Gb) Check profiles & code systems (01:49.963 / 09:11.822, 7Gb) Check realm rules (00:00.017 / 09:11.839, 7Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:04.724 / 09:16.564, 8Gb) Checking for Bundles to sign (00:00.104 / 09:16.668, 8Gb) Validating Resources (00:00.000 / 09:16.668, 8Gb) Processing Provenance Records (00:27.274 / 09:43.943, 9Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 09:43.944, 9Gb) Generate Native Outputs (00:00.447 / 09:44.391, 9Gb) Run Template (00:36.213 / 10:20.605, 2Gb) Generate HTML Outputs (00:02.888 / 10:23.494, 2Gb) Generate Spreadsheets (01:09.803 / 11:33.297, 8Gb) Generate Summaries (00:17.743 / 11:51.040, 2Gb) Generating Summary Outputs (00:00.000 / 11:51.040, 2Gb) DB Cumulative Time invested: 00:00:24.905 Sending Usage Stats to Server (00:20.657 / 12:11.698, 3Gb) ## Memory (MB): Use = 3676, Free = 15331, Total = 19008, Max = 19008 (00:00.016 / 12:11.715, 3Gb) Reclaiming memory... (00:00.000 / 12:11.715, 3Gb) ## Memory (MB): Use = 1030, Free = 17977, Total = 19008, Max = 19008 (00:01.840 / 12:13.556, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.015 / 12:13.571, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.016 / 12:13.588, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 12:13.588, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 12:13.588, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.694 / 12:14.283, 1Gb) Jekyll: Generating... (00:00.000 / 12:14.283, 1Gb) Jekyll: done in 11.375 seconds. (00:11.374 / 12:25.657, 1Gb) Checking Output HTML (00:12.390 / 12:38.048, 3Gb) found 1878 files (00:00.012 / 12:38.060, 3Gb) ........................................ ........................Sending usage stats failed: Connection timed out ................ ... 1878 html files, 0 pages invalid xhtml (0%) (01:59.605 / 14:37.666, 8Gb) ... 1168881 links, 0 broken links (0%) (00:00.000 / 14:37.666, 8Gb) Generate fragment-usage-analysis.csv (00:00.000 / 14:37.666, 8Gb) Build final .zip (00:00.010 / 14:37.677, 8Gb) Final .zip built (00:09.802 / 14:47.479, 8Gb) Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Built. Times: loading: 00:10.733, generate: 11:26.894, propagating status: 00:00.413, narrative generation: 03:52.079, realm-rules: 00:04.724, previous-version: 00:00.000, jekyll: 00:12.158, validation: 02:16.803 (#127), template: 00:02.904 (#3) (00:08.533 / 14:56.012, 9Gb) Generating QA (00:00.000 / 14:56.012, 9Gb) Validation output in /scratch/repo/output/qa.html Errors: 6, Warnings: 140, Info: 2, Broken Links: 0 (00:00.816 / 14:56.829, 9Gb) Finished @ 7/31/25, 9:57 PM. Max Memory Used = 9Gb (00:00.046 / 14:56.875, 9Gb)