INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/case-reporting --branch master repo DEBUG:root:Time to deadline 35879.998023 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35870.039723 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35868.970738 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/case-reporting/ -out /scratch/repo DEBUG:root:Time to deadline 35862.526969 seconds FHIR IG Publisher Version 2.0.28 (Git# 6c0c59a855ec). Built 2025-12-08T04:22:21.813Z (7 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/case-reporting/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Monday, December 15, 2025, 5:32:39 PM Coordinated Universal Time (2025-12-15T17:32:39Z) Build FHIR IG from /scratch/repo (00:00.026 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.029, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.033, 97Mb) Found dependency on hl7.fhir.us.core#6.1.0 in Sushi config. Pre-installing (00:00.008 / 00:00.041, 97Mb) Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Found dependency on us.nlm.vsac#0.23.0 in Sushi config. Pre-installing (00:02.751 / 00:02.792, 81Mb) Installing us.nlm.vsac#0.23.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.23.0  done. Found dependency on us.cdc.phinvads#0.12.0 in Sushi config. Pre-installing (00:05.349 / 00:08.142, 425Mb) Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Found dependency on hl7.fhir.us.bfdr#2.0.0 in Sushi config. Pre-installing (00:11.913 / 00:20.055, 737Mb) Installing hl7.fhir.us.bfdr#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.bfdr#2.0.0  done. Found dependency on hl7.fhir.us.odh#1.3.0 in Sushi config. Pre-installing (00:01.633 / 00:21.689, 769Mb) Installing hl7.fhir.us.odh#1.3.0 to the package cache  Fetching:  Installing hl7.fhir.us.odh#1.3.0  done. Found dependency on hl7.fhir.us.ph-library#2.0.0-snapshot in Sushi config. Pre-installing (00:00.388 / 00:22.077, 774Mb) Installing hl7.fhir.us.ph-library#2.0.0-snapshot to the package cache  Fetching:  Installing hl7.fhir.us.ph-library#2.0.0-snapshot  done. Found dependency on hl7.fhir.uv.cql#2.0.0 in Sushi config. Pre-installing (00:00.840 / 00:22.918, 785Mb) Installing hl7.fhir.uv.cql#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cql#2.0.0  done. Found dependency on hl7.fhir.uv.crmi#1.0.0 in Sushi config. Pre-installing (00:00.572 / 00:23.490, 793Mb) Installing hl7.fhir.uv.crmi#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.crmi#1.0.0  done. Run Sushi on /scratch/repo (00:01.322 / 00:24.813, 817Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.717 / 00:25.531, 825Mb) Sushi: info Arguments: (00:00.000 / 00:25.531, 825Mb) Sushi: info --require-latest (00:00.000 / 00:25.532, 825Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:25.532, 825Mb) Sushi: info /scratch/repo (00:00.000 / 00:25.532, 825Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.747 / 00:26.280, 825Mb) Sushi: info Importing FSH text... (00:00.158 / 00:26.439, 825Mb) Sushi: info Preprocessed 185 documents with 76 aliases. (00:02.818 / 00:29.258, 825Mb) Sushi: info Imported 78 definitions and 94 instances. (00:00.229 / 00:29.488, 825Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.148 / 00:29.636, 825Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.629 / 00:30.266, 825Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:30.267, 825Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.825 / 00:31.093, 825Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:31.095, 825Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.102 / 00:31.198, 825Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.1 (00:00.463 / 00:31.662, 825Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.1 from https://packages.fhir.org/hl7.terminology.r4/7.0.1 (00:00.000 / 00:31.663, 825Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.1 (00:02.781 / 00:34.444, 825Mb) Sushi: info Cached hl7.terminology.r4#7.0.1 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.1 (00:00.001 / 00:34.446, 825Mb) Sushi: info Loaded hl7.terminology.r4#7.0.1 with 4096 resources (00:01.745 / 00:36.192, 825Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.469 / 00:36.661, 825Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:36.661, 825Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.427 / 00:38.089, 825Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:38.090, 825Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.433 / 00:38.524, 825Mb) Sushi: info Loaded hl7.fhir.us.core#6.1.0 with 210 resources (00:00.162 / 00:38.686, 825Mb) Sushi: info Loaded us.nlm.vsac#0.23.0 with 7882 resources (00:06.622 / 00:45.308, 825Mb) Sushi: info Loaded us.cdc.phinvads#0.12.0 with 1967 resources (00:02.361 / 00:47.670, 825Mb) Sushi: info Loaded hl7.fhir.us.bfdr#2.0.0 with 142 resources (00:00.256 / 00:47.926, 825Mb) Sushi: info Loaded hl7.fhir.us.odh#1.3.0 with 10 resources (00:00.025 / 00:47.951, 825Mb) Sushi: info Loaded hl7.fhir.us.ph-library#2.0.0-snapshot with 84 resources (00:00.080 / 00:48.032, 825Mb) Sushi: info Loaded hl7.fhir.uv.cql#2.0.0 with 21 resources (00:00.033 / 00:48.065, 825Mb) Sushi: info Loaded hl7.fhir.uv.crmi#1.0.0 with 79 resources (00:00.090 / 00:48.155, 825Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:48.156, 825Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.281 / 00:51.438, 825Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.002 / 00:51.440, 825Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.528 / 00:52.968, 825Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.016 / 00:52.985, 825Mb) Sushi: info Converting FSH to FHIR resources... (00:00.040 / 00:53.025, 825Mb) Sushi: info Converted 28 FHIR StructureDefinitions. (00:10.995 / 01:04.021, 825Mb) Sushi: info Converted 3 FHIR CodeSystems. (00:19.073 / 01:23.095, 825Mb) Sushi: info Converted 47 FHIR ValueSets. (00:22.874 / 01:45.969, 825Mb) Sushi: warn Contained instance "library-us-ph-specification-library-example" is an example and probably should not be included in a conformance resource. (00:07.701 / 01:53.671, 825Mb) Sushi: File: /scratch/repo/input/fsh/instances/bundle-ersd-specification-example.fsh (00:00.000 / 01:53.671, 825Mb) Sushi: Line: 9 (00:00.000 / 01:53.671, 825Mb) Sushi: warn Contained instance "plandefinition-ersd-instance-example" is an example and probably should not be included in a conformance resource. (00:04.305 / 01:57.977, 825Mb) Sushi: File: /scratch/repo/input/fsh/instances/bundle-ersd-specification-example.fsh (00:00.000 / 01:57.977, 825Mb) Sushi: Line: 11 (00:00.000 / 01:57.977, 825Mb) Sushi: warn Contained instance "library-rctc-example" is an example and probably should not be included in a conformance resource. (00:00.203 / 01:58.181, 825Mb) Sushi: File: /scratch/repo/input/fsh/instances/bundle-ersd-specification-example.fsh (00:00.000 / 01:58.181, 825Mb) Sushi: Line: 13 (00:00.000 / 01:58.181, 825Mb) Sushi: warn Contained instance "library-ersd-supplemental-library-example" is an example and probably should not be included in a conformance resource. (00:00.848 / 01:59.030, 825Mb) Sushi: File: /scratch/repo/input/fsh/instances/bundle-ersd-supplemental-example.fsh (00:00.000 / 01:59.030, 825Mb) Sushi: Line: 8 (00:00.000 / 01:59.031, 825Mb) Sushi: warn Contained instance "library-executable-rule-filters-example" is an example and probably should not be included in a conformance resource. (00:01.049 / 02:00.081, 825Mb) Sushi: File: /scratch/repo/input/fsh/instances/bundle-ersd-supplemental-example.fsh (00:00.000 / 02:00.081, 825Mb) Sushi: Line: 10 (00:00.000 / 02:00.081, 825Mb) Sushi: warn Contained instance "library-us-ph-supplemental-valueset-library-example" is an example and probably should not be included in a conformance resource. (00:00.154 / 02:00.236, 825Mb) Sushi: File: /scratch/repo/input/fsh/instances/bundle-ersd-supplemental-example.fsh (00:00.000 / 02:00.236, 825Mb) Sushi: Line: 12 (00:00.000 / 02:00.237, 825Mb) Sushi: info Converted 94 FHIR instances. (00:15.187 / 02:15.424, 825Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.052 / 02:15.476, 825Mb) Sushi: info Exported 172 FHIR resources as JSON. (00:00.346 / 02:15.823, 825Mb) Sushi: info Assembling Implementation Guide sources... (00:00.006 / 02:15.829, 825Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.ecr.json (00:00.060 / 02:15.890, 825Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 02:15.890, 825Mb) Sushi: info The sample-ig located at https://github.com/FHIR/sample-ig contains scripts useful for downloading and running the IG Publisher. (00:00.000 / 02:15.890, 825Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 02:15.892, 825Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:15.892, 825Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 02:15.893, 825Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 02:15.893, 825Mb) Sushi: | | 22 | 6 | 0 | 0 | | (00:00.000 / 02:15.893, 825Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:15.893, 825Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:15.893, 825Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 02:15.894, 825Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 02:15.894, 825Mb) Sushi: | | 47 | 3 | 94 | | (00:00.000 / 02:15.894, 825Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:15.894, 825Mb) Sushi: | | (00:00.000 / 02:15.894, 825Mb) Sushi: =================================================================== (00:00.000 / 02:15.894, 825Mb) Sushi: | Don't be koi about asking for help. 0 Errors 6 Warnings | (00:00.000 / 02:15.894, 825Mb) Sushi: =================================================================== (00:00.000 / 02:15.895, 825Mb) Root directory: /scratch/repo (00:00.041 / 02:15.936, 825Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.748 / 02:16.685, 56Mb) Load Template from hl7.fhir.template#current (00:00.654 / 02:17.339, 57Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.498 / 02:17.837, 105Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.047 / 02:17.885, 105Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.124 / 02:22.009, 353Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 02:22.010, 353Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-7509496717400633541.html Connect to Terminology Server at http://tx.fhir.org (00:26.386 / 02:48.396, 912Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#7.0.1 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:36.722 / 03:25.119, 664Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Load Package us.cdc.phinvads#0.12.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package us.nlm.vsac#0.23.0 Load Package us.cdc.phinvads#0.12.0 Installing hl7.terminology.r4#6.0.2 to the package cache  Fetching:  Installing hl7.terminology.r4#6.0.2  done. Load Package hl7.terminology.r4#6.0.2 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing hl7.fhir.us.core#5.0.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#5.0.1  done. Installing hl7.terminology.r4#3.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#3.1.0  done. Load Package hl7.terminology.r4#3.1.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.7.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.7.0  done. Load Package us.nlm.vsac#0.7.0 Load Package hl7.fhir.us.core#5.0.1 Installing us.nlm.vsac#0.19.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.19.0  done. Load Package us.nlm.vsac#0.19.0 Installing hl7.fhir.us.vr-common-library#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.vr-common-library#2.0.0  done. Load Package hl7.fhir.us.vr-common-library#2.0.0 Load Package hl7.fhir.us.odh#1.3.0 Load Package hl7.fhir.us.bfdr#2.0.0 Load Package hl7.fhir.us.odh#1.3.0 Installing hl7.terminology.r4#7.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#7.0.0  done. Load Package hl7.terminology.r4#7.0.0 Installing hl7.terminology#5.5.0 to the package cache  Fetching:  Installing hl7.terminology#5.5.0  done. Load Package hl7.terminology#5.5.0 Load Package hl7.fhir.uv.crmi#1.0.0 Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.cql#2.0.0 Load Package hl7.fhir.us.ph-library#2.0.0-snapshot Load Package hl7.fhir.uv.cql#2.0.0 Load Package hl7.fhir.uv.crmi#1.0.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (02:55.572 / 06:20.691, 4Gb) Load IG (00:00.000 / 06:20.692, 4Gb) Load Translations (00:00.003 / 06:20.695, 4Gb) Load Content (00:00.000 / 06:20.695, 4Gb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.173 / 06:20.868, 4Gb) Process Loaded Resources (00:05.791 / 06:26.660, 4Gb) Generating Snapshots (00:03.218 / 06:29.879, 1Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/ecr/package-list.json for version check (00:06.414 / 06:36.293, 2Gb) Checking Language (00:00.191 / 06:36.485, 2Gb) Load Dependency Info (00:00.005 / 06:36.490, 2Gb) Load Info (00:00.001 / 06:36.492, 2Gb) Load Paths (00:00.001 / 06:36.493, 2Gb) Check R4 / R4B (00:00.000 / 06:36.494, 2Gb) Assign Comparison Ids (00:00.254 / 06:36.748, 2Gb) Propagating status (00:00.000 / 06:36.748, 2Gb) Generating Narratives (00:00.148 / 06:36.897, 2Gb) Validating Conformance Resources (00:14.869 / 06:51.766, 1Gb) Check profiles & code systems (03:34.666 / 10:26.433, 2Gb) Check realm rules (00:00.008 / 10:26.441, 2Gb) Installing hl7.fhir.us.core#9.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.core#9.0.0-ballot  done. US Core Comparisons Finished Previous Version Comparison (00:35.741 / 11:02.182, 4Gb) Checking for Bundles to sign (00:00.086 / 11:02.269, 4Gb) Validating Resources (00:00.000 / 11:02.269, 4Gb) Processing Provenance Records (04:19.380 / 15:21.650, 7Gb) Generating Translation artifacts (00:00.000 / 15:21.651, 7Gb) Generating Outputs in /scratch/repo/output (00:00.002 / 15:21.653, 7Gb) Generate Native Outputs (00:00.437 / 15:22.091, 7Gb) Run Template (00:40.363 / 16:02.454, 3Gb) **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): Acanthamoeba Disease [Keratitis] **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): Anthrax **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): Arsenic Exposure and Toxicity **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): HIV Infection **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): HIV Infection **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): HIV Infection **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): Mumps Generate HTML Outputs (00:03.575 / 16:06.030, 4Gb) Generate Spreadsheets (01:33.282 / 17:39.313, 8Gb) Generate Summaries (00:11.544 / 17:50.857, 2Gb) Generating Summary Outputs (en) (00:00.000 / 17:50.858, 2Gb) Unable to find 3-character code having same country code as ISO 2-char code AA - User-assigned (00:25.438 / 18:16.296, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QM - User-assigned (00:00.000 / 18:16.296, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QN - User-assigned (00:00.000 / 18:16.296, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QO - User-assigned (00:00.000 / 18:16.296, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QP - User-assigned (00:00.000 / 18:16.296, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QQ - User-assigned (00:00.000 / 18:16.296, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QR - User-assigned (00:00.000 / 18:16.296, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QS - User-assigned (00:00.000 / 18:16.296, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QT - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QU - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QV - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QW - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QX - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QY - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code QZ - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XA - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XB - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XC - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XD - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XE - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XF - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XG - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XH - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XI - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XJ - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XK - Kosovo (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XL - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XM - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XN - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XO - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XP - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XQ - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XR - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XS - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XT - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XU - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XV - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XW - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XX - Unknown (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XY - User-assigned (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code XZ - International Waters (00:00.000 / 18:16.297, 9Gb) Unable to find 3-character code having same country code as ISO 2-char code ZZ - Unknown or Invalid Territory (00:00.000 / 18:16.297, 9Gb) DB Cumulative Time invested: 00:00:16.28 Sending Usage Stats to Server (00:02.173 / 18:18.471, 9Gb) ## Memory (MB): Use = 10081, Free = 8926, Total = 19008, Max = 19008 (00:00.015 / 18:18.487, 9Gb) Reclaiming memory... (00:00.000 / 18:18.487, 9Gb) ## Memory (MB): Use = 2105, Free = 16902, Total = 19008, Max = 19008 (00:02.714 / 18:21.202, 2Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 18:21.203, 2Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 18:21.203, 2Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 18:21.203, 2Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 18:21.203, 2Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.550 / 18:21.753, 2Gb) Jekyll: Generating... (00:00.000 / 18:21.754, 2Gb) Jekyll: done in 10.976 seconds. (00:10.975 / 18:32.730, 2Gb) Checking Output HTML (00:08.938 / 18:41.668, 6Gb) AI format for /scratch/repo/output/en - % reduction = 99 found 4830 files (00:06.184 / 18:47.852, 12Gb) ........................................ .........................Sending usage stats failed: Connection timed out ............... ... 4830 html files, 0 pages invalid xhtml (0%) (01:52.714 / 20:40.567, 2Gb) ... 901679 links, 0 broken links (0%) (00:00.001 / 20:40.569, 2Gb) Generate fragment-usage-analysis.csv (00:00.000 / 20:40.569, 2Gb) Build final .zip (00:00.028 / 20:40.598, 2Gb) Final .zip built (00:12.638 / 20:53.237, 2Gb) Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Built. Times: loading: 00:15.790, generate: 14:59.478, propagating status: 00:00.148, narrative generation: 00:14.868, realm-rules: 00:35.741, previous-version: 00:00.000, jekyll: 00:11.582, validation: 07:53.755 (#173), template: 00:03.461 (#3) (00:42.727 / 21:35.964, 3Gb) Generating QA (00:00.000 / 21:35.965, 3Gb) Validation output in /scratch/repo/output/qa.html Errors: 1, Warnings: 0, Info: 0, Broken Links: 0 (00:00.696 / 21:36.661, 3Gb) Finished @ 12/15/25, 5:54 PM. Max Memory Used = 12Gb (00:00.050 / 21:36.711, 4Gb)