INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/carin-bb --branch master repo DEBUG:root:Time to deadline 35879.998243 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35871.709512 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35870.440203 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 177 packages in 7s 28 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.1.0 npm notice Changelog: npm notice Run `npm install -g npm@11.1.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/carin-bb/ -out /scratch/repo DEBUG:root:Time to deadline 35863.397748 seconds FHIR IG Publisher Version 1.8.13 (Git# e89cdedc7f58). Built 2025-02-17T04:21:57.376Z (14 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/carin-bb/ -out /scratch/repo Start Clock @ Monday, February 17, 2025, 7:01:44 PM Coordinated Universal Time (2025-02-17T19:01:44Z) Build FHIR IG from /scratch/repo (00:00.025 / 00:00.026, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.028, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.031, 97Mb) Run Sushi on /scratch/repo (00:00.003 / 00:00.035, 97Mb) Sushi: info Running SUSHI v3.14.0 (implements FHIR Shorthand specification v3.0.0) (00:00.750 / 00:00.785, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.786, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.786, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.787, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.787, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.703 / 00:01.491, 113Mb) Sushi: info Importing FSH text... (00:00.166 / 00:01.657, 113Mb) Sushi: info Preprocessed 71 documents with 110 aliases. (00:01.041 / 00:02.698, 113Mb) Sushi: info Imported 78 definitions and 55 instances. (00:00.100 / 00:02.799, 113Mb) Sushi: warn Detected FSH entity definitions with duplicate names. While FSH allows for duplicate names across entity types, they can lead to ambiguous results when referring to these entities by name elsewhere (e.g., in references). Consider using unique names in FSH declarations and assigning duplicated names using caret assignment rules instead. Detected duplicate names: C4BBAdjudication, C4BBPayeeType, C4BBRelatedClaimRelationshipCodes, C4BBSupportingInfoType, C4BBClaimProcedureType, C4BBInstitutionalClaimSubType. (00:00.016 / 00:02.815, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.135 / 00:02.951, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.3.0 (00:00.631 / 00:03.582, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.3.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.3.0 (00:00.001 / 00:03.583, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.3.0 (00:00.996 / 00:04.579, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.3.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.3.0 (00:00.003 / 00:04.583, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.3.0 with 75 resources (00:00.072 / 00:04.655, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.2.0 (00:00.470 / 00:05.125, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.2.0 from https://packages.fhir.org/hl7.terminology.r4/6.2.0 (00:00.000 / 00:05.126, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.2.0 (00:02.608 / 00:07.734, 113Mb) Sushi: info Cached hl7.terminology.r4#6.2.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.2.0 (00:00.001 / 00:07.735, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.2.0 with 4323 resources (00:01.852 / 00:09.588, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.461 / 00:10.049, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:10.050, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.481 / 00:11.531, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.002 / 00:11.533, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.369 / 00:11.903, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core#6.1.0 from https://packages.fhir.org/hl7.fhir.us.core/6.1.0 (00:00.001 / 00:11.905, 113Mb) Sushi: info Downloaded hl7.fhir.us.core#6.1.0 (00:01.861 / 00:13.766, 113Mb) Sushi: info Cached hl7.fhir.us.core#6.1.0 to /home/fhiruser/.fhir/packages/hl7.fhir.us.core#6.1.0 (00:00.001 / 00:13.767, 113Mb) Sushi: info Loaded hl7.fhir.us.core#6.1.0 with 210 resources (00:00.163 / 00:13.931, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core.3.1.1#3.1.1 from https://packages.fhir.org/hl7.fhir.us.core.3.1.1/3.1.1 (00:00.000 / 00:13.932, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core.3.1.1#3.1.1 from https://packages2.fhir.org/packages/hl7.fhir.us.core.3.1.1/3.1.1 (00:00.472 / 00:14.404, 113Mb) Sushi: info Downloaded hl7.fhir.us.core.3.1.1#3.1.1 (00:00.284 / 00:14.689, 113Mb) Sushi: info Cached hl7.fhir.us.core.3.1.1#3.1.1 to /home/fhiruser/.fhir/packages/hl7.fhir.us.core.3.1.1#3.1.1 (00:00.001 / 00:14.690, 113Mb) Sushi: info Loaded hl7.fhir.us.core.3.1.1#3.1.1 with 0 resources (00:00.000 / 00:14.691, 113Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r5 (00:00.000 / 00:14.691, 113Mb) Sushi: info Attempting to download hl7.fhir.r5.core#5.0.0 from https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.025 / 00:14.717, 113Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:04.634 / 00:19.352, 113Mb) Sushi: info Cached hl7.fhir.r5.core#5.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.r5.core#5.0.0 (00:00.006 / 00:19.358, 113Mb) Sushi: info Loaded hl7.fhir.r5.core#5.0.0 with 2968 resources (00:01.476 / 00:20.834, 113Mb) Sushi: info Attempting to download us.nlm.vsac#0.21.0 from https://packages.fhir.org/us.nlm.vsac/0.21.0 (00:00.001 / 00:20.836, 113Mb) Sushi: info Attempting to download us.nlm.vsac#0.21.0 from https://packages2.fhir.org/packages/us.nlm.vsac/0.21.0 (00:00.470 / 00:21.306, 113Mb) Sushi: info Downloaded us.nlm.vsac#0.21.0 (00:04.759 / 00:26.066, 113Mb) Sushi: info Cached us.nlm.vsac#0.21.0 to /home/fhiruser/.fhir/packages/us.nlm.vsac#0.21.0 (00:00.001 / 00:26.067, 113Mb) Sushi: info Loaded us.nlm.vsac#0.21.0 with 7243 resources (00:06.361 / 00:32.429, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:32.430, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.199 / 00:35.629, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:35.630, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.572 / 00:37.202, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 1 resources (00:00.008 / 00:37.211, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.035 / 00:37.247, 113Mb) Sushi: info Converted 16 FHIR StructureDefinitions. (00:14.954 / 00:52.202, 113Mb) Sushi: info Converted 12 FHIR CodeSystems. (00:00.393 / 00:52.595, 113Mb) Sushi: info Converted 50 FHIR ValueSets. (00:01.668 / 00:54.264, 113Mb) Sushi: info Converted 55 FHIR instances. (00:19.949 / 01:14.214, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 01:14.215, 113Mb) Sushi: info Exported 133 FHIR resources as JSON. (00:00.457 / 01:14.673, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.005 / 01:14.678, 113Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.carin-bb.json (00:00.060 / 01:14.739, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:14.739, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 01:14.742, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:14.742, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:14.742, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:14.743, 113Mb) Sushi: | | 16 | 0 | 0 | 0 | | (00:00.000 / 01:14.743, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:14.743, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:14.743, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:14.743, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:14.743, 113Mb) Sushi: | | 50 | 12 | 55 | | (00:00.000 / 01:14.743, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:14.744, 113Mb) Sushi: | | (00:00.000 / 01:14.744, 113Mb) Sushi: =================================================================== (00:00.000 / 01:14.744, 113Mb) Sushi: | This looks a bit fishy. 0 Errors 1 Warning | (00:00.000 / 01:14.744, 113Mb) Sushi: =================================================================== (00:00.000 / 01:14.744, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.915 / 01:15.660, 37Mb) Load Template from hl7.fhir.template#current (00:00.723 / 01:16.384, 93Mb) Installing hl7.fhir.template#current to the package cache Fetching: Installing hl7.fhir.template#current done. Load Template from hl7.base.template#current (00:01.440 / 01:17.824, 88Mb) Installing hl7.base.template#current to the package cache Fetching: Installing hl7.base.template#current done. Load Template from fhir.base.template#current (00:00.194 / 01:18.019, 96Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. Root directory: /scratch/repo (00:04.773 / 01:22.792, 392Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 01:22.794, 392Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-4978362116445310690.log Connect to Terminology Server at http://tx.fhir.org (00:29.158 / 01:51.953, 250Mb) Installing hl7.fhir.pubpack#0.2.1 to the package cache Fetching: Installing hl7.fhir.pubpack#0.2.1 done. Load Package hl7.fhir.pubpack#0.2.1 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.2.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: Installing hl7.terminology.r4#5.0.0 done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#1.0.0 done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache Fetching: Installing hl7.fhir.uv.bulkdata#2.0.0 done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache Fetching: Installing hl7.fhir.uv.smart-app-launch#2.1.0 done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache Fetching: Installing us.nlm.vsac#0.11.0 done. Load Package us.nlm.vsac#0.11.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache Fetching: Installing hl7.fhir.uv.sdc#3.0.0 done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:43.086 / 02:35.040, 882Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache Fetching: Installing us.cdc.phinvads#0.12.0 done. Load Package us.cdc.phinvads#0.12.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache Fetching: Installing ihe.formatcode.fhir#1.1.0 done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Installing hl7.fhir.us.core#3.1.1 to the package cache Fetching: Installing hl7.fhir.us.core#3.1.1 done. Load Package hl7.fhir.us.core#3.1.1 Load Package hl7.fhir.us.core.3.1.1#3.1.1 Load Package us.nlm.vsac#0.21.0 Load Package hl7.fhir.uv.tools.r4#0.3.0 Load R5 Specials Initialization complete (00:16.705 / 02:51.745, 696Mb) Load Content (00:00.000 / 02:51.745, 696Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.166 / 02:51.912, 720Mb) Process Loaded Resources (00:03.103 / 02:55.015, 912Mb) Generating Snapshots (00:01.008 / 02:56.024, 1Gb) loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Fetch http://hl7.org/fhir/us/carin-bb/package-list.json for version check (00:03.172 / 02:59.197, 917Mb) Processing Conformance Resources (00:00.147 / 02:59.344, 925Mb) Checking Language (00:00.000 / 02:59.344, 925Mb) Load Dependency Info (00:00.003 / 02:59.348, 925Mb) Load Info (00:00.001 / 02:59.350, 925Mb) Load Paths (00:00.000 / 02:59.351, 930Mb) Check R4 / R4B (00:00.000 / 02:59.351, 930Mb) Assign Comparison Ids (00:00.061 / 02:59.413, 941Mb) Propagating status (00:00.000 / 02:59.413, 941Mb) Generating Narratives (00:00.278 / 02:59.692, 1Gb) Validating Conformance Resources (00:06.985 / 03:06.677, 1Gb) Check profiles & code systems (00:51.563 / 03:58.240, 1Gb) Check realm rules (00:00.009 / 03:58.250, 1Gb) Installing hl7.fhir.us.core#8.0.0-ballot to the package cache Fetching: Installing hl7.fhir.us.core#8.0.0-ballot done. US Core Comparisons Finished Previous Version Comparison (00:03.043 / 04:01.293, 2Gb) Installing hl7.fhir.us.carin-bb#2.1.0-snapshot1 to the package cache Fetching: Installing hl7.fhir.us.carin-bb#2.1.0-snapshot1 done. Installing hl7.terminology.r4#6.0.2 to the package cache Fetching: Installing hl7.terminology.r4#6.0.2 done. Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#5.1.0 done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.examples#4.0.1 done. Installing us.nlm.vsac#0.7.0 to the package cache Fetching: Installing us.nlm.vsac#0.7.0 done. Validating Resources (02:13.757 / 06:15.051, 1Gb) Processing Provenance Records (00:05.153 / 06:20.204, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 06:20.205, 2Gb) Generate Native Outputs (00:00.219 / 06:20.424, 2Gb) Run Template (00:24.483 / 06:44.907, 4Gb) Generate HTML Outputs (00:02.753 / 06:47.661, 5Gb) Generate Spreadsheets (02:08.551 / 08:56.212, 5Gb) Generate Summaries (00:18.127 / 09:14.339, 5Gb) Generating Summary Outputs (00:00.000 / 09:14.339, 5Gb) DB Cumulative Time invested: 00:00:17.678 Sending Usage Stats to Server (00:19.956 / 09:34.296, 5Gb) ## Memory (MB): Use = 5645, Free = 13362, Total = 19008, Max = 19008 (00:00.008 / 09:34.304, 5Gb) Reclaiming memory... (00:00.000 / 09:34.305, 5Gb) ## Memory (MB): Use = 4835, Free = 14172, Total = 19008, Max = 19008 (00:04.489 / 09:38.794, 4Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 09:38.796, 4Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 09:38.796, 4Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 09:38.796, 4Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 09:38.796, 4Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.526 / 09:39.323, 4Gb) Jekyll: Generating... (00:00.000 / 09:39.323, 4Gb) Jekyll: done in 7.207 seconds. (00:07.206 / 09:46.529, 4Gb) Checking Output HTML (00:09.897 / 09:56.427, 5Gb) found 1998 files (00:00.010 / 09:56.437, 5Gb) ........................................ ........................................ ... 1998 html files, 0 pages invalid xhtml (0%) (01:17.742 / 11:14.180, 9Gb) ... 968699 links, 0 broken links (0%) (00:00.000 / 11:14.181, 9Gb) Generate fragment-usage-analysis.csv (00:00.000 / 11:14.181, 9Gb) Build final .zip (00:00.011 / 11:14.193, 9Gb) Final .zip built (00:09.106 / 11:23.299, 9Gb) Built. Times: loading: 00:07.598, generate: 08:43.545, propagating status: 00:00.278, narrative generation: 00:06.984, realm-rules: 00:03.043, previous-version: 02:13.661, jekyll: 00:07.778, validation: 00:56.705 (#135), template: 00:02.762 (#3) (00:19.671 / 11:42.970, 10Gb) Generating QA (00:00.000 / 11:42.971, 10Gb) Sending usage stats failed: Connection timed out Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links: 0 (00:13.210 / 11:56.181, 12Gb) Finished. Max Memory Used = 12Gb (00:00.038 / 11:56.220, 12Gb)