INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/cancer-reporting --branch master repo DEBUG:root:Time to deadline 35879.997515 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.276555 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.005986 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.1 npm notice Changelog: npm notice Run `npm install -g npm@11.6.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/cancer-reporting/ -out /scratch/repo DEBUG:root:Time to deadline 35870.604506 seconds FHIR IG Publisher Version 2.0.18 (Git# 073deb2e0664). Built 2025-10-01T03:24:07.806Z (39 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/cancer-reporting/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, October 2, 2025, 6:42:32 PM Coordinated Universal Time (2025-10-02T18:42:32Z) Build FHIR IG from /scratch/repo (00:00.033 / 00:00.034, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.037, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.041, 97Mb) Found dependency on hl7.fhir.uv.extensions.r4#5.2.0 in Sushi config. Pre-installing (00:00.005 / 00:00.046, 97Mb) Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Found dependency on hl7.fhir.us.core#6.1.0 in Sushi config. Pre-installing (00:02.356 / 00:02.403, 97Mb) Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Run Sushi on /scratch/repo (00:00.861 / 00:03.264, 129Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.827 / 00:04.091, 137Mb) Sushi: info Arguments: (00:00.000 / 00:04.092, 137Mb) Sushi: info --require-latest (00:00.000 / 00:04.092, 137Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:04.092, 137Mb) Sushi: info /scratch/repo (00:00.000 / 00:04.093, 137Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.855 / 00:04.949, 137Mb) Sushi: info Importing FSH text... (00:00.175 / 00:05.124, 137Mb) Sushi: info Preprocessed 78 documents with 16 aliases. (00:00.459 / 00:05.583, 137Mb) Sushi: info Imported 15 definitions and 61 instances. (00:00.048 / 00:05.632, 137Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.228 / 00:05.860, 137Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.638 / 00:06.499, 137Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:06.500, 137Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.870 / 00:07.370, 137Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.004 / 00:07.375, 137Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.091 / 00:07.466, 137Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.464 / 00:07.930, 137Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:07.931, 137Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.455 / 00:11.386, 145Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:11.388, 145Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.876 / 00:13.264, 145Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.328 / 00:13.592, 145Mb) Sushi: info Loaded hl7.fhir.us.core#6.1.0 with 210 resources (00:00.175 / 00:13.767, 145Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:13.768, 145Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.908 / 00:17.676, 145Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.002 / 00:17.678, 145Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.745 / 00:19.423, 145Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.011 / 00:19.435, 145Mb) Sushi: info Converting FSH to FHIR resources... (00:00.027 / 00:19.463, 145Mb) Sushi: info Converted 8 FHIR StructureDefinitions. (00:01.874 / 00:21.337, 145Mb) Sushi: info Converted 1 FHIR CodeSystems. (00:00.062 / 00:21.399, 145Mb) Sushi: info Converted 6 FHIR ValueSets. (00:00.358 / 00:21.757, 145Mb) Sushi: info Converted 61 FHIR instances. (00:09.006 / 00:30.763, 145Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 00:30.764, 145Mb) Sushi: info Exported 76 FHIR resources as JSON. (00:00.089 / 00:30.854, 145Mb) Sushi: info Assembling Implementation Guide sources... (00:00.004 / 00:30.858, 145Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.cancer-reporting.json (00:00.078 / 00:30.936, 145Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:30.937, 145Mb) Sushi: info The sample-ig located at https://github.com/FHIR/sample-ig contains scripts useful for downloading and running the IG Publisher. (00:00.000 / 00:30.937, 145Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:30.939, 145Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:30.939, 145Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:30.939, 145Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:30.939, 145Mb) Sushi: | | 7 | 1 | 0 | 0 | | (00:00.000 / 00:30.940, 145Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:30.940, 145Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:30.940, 145Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:30.940, 145Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:30.941, 145Mb) Sushi: | | 6 | 1 | 61 | | (00:00.000 / 00:30.941, 145Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:30.941, 145Mb) Sushi: | | (00:00.000 / 00:30.941, 145Mb) Sushi: =================================================================== (00:00.000 / 00:30.942, 145Mb) Sushi: | You swim with the sharks! 0 Errors 0 Warnings | (00:00.000 / 00:30.942, 145Mb) Sushi: =================================================================== (00:00.000 / 00:30.942, 145Mb) Root directory: /scratch/repo (00:00.023 / 00:30.966, 145Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.792 / 00:31.759, 56Mb) Load Template from #smart-template (00:00.725 / 00:32.484, 57Mb) Load Template from hl7.fhir.template#0.10.1 (00:00.004 / 00:32.488, 57Mb) Installing hl7.fhir.template#0.10.1 to the package cache  Fetching:  Installing hl7.fhir.template#0.10.1  done.  Load Template from hl7.base.template#0.10.1 (00:00.549 / 00:33.038, 73Mb) Installing hl7.base.template#0.10.1 to the package cache  Fetching:  Installing hl7.base.template#0.10.1  done.  Load Template from fhir.base.template#0.8.1 (00:00.410 / 00:33.449, 73Mb) Installing fhir.base.template#0.8.1 to the package cache  Fetching:  Installing fhir.base.template#0.8.1  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:05.966 / 00:39.415, 361Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:39.416, 361Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-15025595902368853698.html Connect to Terminology Server at http://tx.fhir.org (00:45.563 / 01:24.980, 393Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:54.825 / 02:19.805, 915Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:24.407 / 02:44.213, 497Mb) Load IG (00:00.000 / 02:44.213, 497Mb) Load Content (00:00.000 / 02:44.214, 497Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.141 / 02:44.355, 506Mb) Process Loaded Resources (00:01.905 / 02:46.260, 609Mb) Generating Snapshots (00:00.439 / 02:46.700, 665Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/cancer-reporting/package-list.json for version check (00:02.000 / 02:48.700, 669Mb) Processing Conformance Resources (00:00.146 / 02:48.846, 677Mb) Checking Language (00:00.000 / 02:48.846, 677Mb) Load Dependency Info (00:00.003 / 02:48.850, 677Mb) Load Info (00:00.002 / 02:48.852, 677Mb) Load Paths (00:00.000 / 02:48.853, 681Mb) Check R4 / R4B (00:00.000 / 02:48.853, 681Mb) Assign Comparison Ids (00:00.080 / 02:48.934, 689Mb) Propagating status (00:00.000 / 02:48.935, 689Mb) Generating Narratives (00:00.083 / 02:49.017, 709Mb) Validating Conformance Resources (00:03.862 / 02:52.880, 719Mb) Check profiles & code systems (00:16.468 / 03:09.348, 1Gb) Check realm rules (00:00.004 / 03:09.352, 1Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:03.806 / 03:13.159, 807Mb) Installing hl7.fhir.us.cancer-reporting#2.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.cancer-reporting#2.0.0-ballot  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Installing hl7.terminology.r4#6.2.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.2.0  done. Checking for Bundles to sign (01:09.362 / 04:22.521, 1Gb) Validating Resources (00:00.000 / 04:22.522, 1Gb) Processing Provenance Records (00:17.844 / 04:40.366, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 04:40.367, 1Gb) Generate Native Outputs (00:00.315 / 04:40.682, 1Gb) Run Template (00:06.095 / 04:46.777, 2Gb) Generate HTML Outputs (00:02.609 / 04:49.387, 2Gb) Generate Spreadsheets (00:17.076 / 05:06.464, 2Gb) Generate Summaries (00:05.140 / 05:11.605, 1Gb) Generating Summary Outputs (00:00.000 / 05:11.605, 1Gb) DB Cumulative Time invested: 00:00:01.8 Sending Usage Stats to Server (00:18.820 / 05:30.425, 2Gb) ## Memory (MB): Use = 2487, Free = 16520, Total = 19008, Max = 19008 (00:00.010 / 05:30.436, 2Gb) Reclaiming memory... (00:00.000 / 05:30.436, 2Gb) ## Memory (MB): Use = 1524, Free = 17483, Total = 19008, Max = 19008 (00:01.998 / 05:32.434, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 05:32.436, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 05:32.436, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 05:32.436, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 05:32.436, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.710 / 05:33.146, 1Gb) Jekyll: Generating... (00:00.000 / 05:33.146, 1Gb) Jekyll: done in 3.019 seconds. (00:03.018 / 05:36.164, 1Gb) Checking Output HTML (00:03.314 / 05:39.479, 2Gb) found 1249 files (00:00.008 / 05:39.487, 2Gb) ........................................ ........................................ ... 1249 html files, 0 pages invalid xhtml (0%) (00:31.720 / 06:11.207, 6Gb) ... 172701 links, 0 broken links (0%) (00:00.000 / 06:11.208, 6Gb) Generate fragment-usage-analysis.csv (00:00.000 / 06:11.208, 6Gb) Build final .zip (00:00.009 / 06:11.218, 6Gb) Final .zip built (00:03.052 / 06:14.271, 6Gb) Built. Times: loading: 00:04.632, generate: 03:31.565, propagating status: 00:00.081, narrative generation: 00:03.862, realm-rules: 00:03.806, previous-version: 01:09.266, jekyll: 00:03.747, validation: 00:34.292 (#77), template: 00:02.609 (#3) (00:06.141 / 06:20.412, 7Gb) Generating QA (00:00.000 / 06:20.412, 7Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links: 0 (00:00.409 / 06:20.822, 7Gb) Finished @ 10/2/25, 6:48 PM. Max Memory Used = 7Gb (00:00.049 / 06:20.871, 7Gb)