INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/bulk-data --branch master repo DEBUG:root:Time to deadline 35879.996334 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.478101 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.356272 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 8s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.4 npm notice Changelog: npm notice Run `npm install -g npm@11.6.4` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/bulk-data/ -out /scratch/repo DEBUG:root:Time to deadline 35870.394519 seconds FHIR IG Publisher Version 2.0.28 (Git# 6c0c59a855ec). Built 2025-12-08T04:22:21.813Z (33 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/bulk-data/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, December 9, 2025, 1:52:35 PM Coordinated Universal Time (2025-12-09T13:52:35Z) Build FHIR IG from /scratch/repo (00:00.170 / 00:00.170, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.173, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.178, 97Mb) Run Sushi on /scratch/repo (00:00.008 / 00:00.186, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.828 / 00:01.014, 113Mb) Sushi: info Arguments: (00:00.000 / 00:01.015, 113Mb) Sushi: info --require-latest (00:00.000 / 00:01.015, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:01.016, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:01.016, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.596 / 00:01.613, 113Mb) Sushi: info Importing FSH text... (00:00.127 / 00:01.740, 113Mb) Sushi: info Preprocessed 9 documents with 1 aliases. (00:00.245 / 00:01.986, 113Mb) Sushi: info Imported 7 definitions and 5 instances. (00:00.044 / 00:02.031, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.095 / 00:02.126, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.611 / 00:02.737, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.000 / 00:02.738, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.867 / 00:03.605, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.003 / 00:03.608, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.071 / 00:03.680, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.0 (00:00.515 / 00:04.195, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.0 from https://packages.fhir.org/hl7.terminology.r4/7.0.0 (00:00.000 / 00:04.196, 113Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.0 (00:02.736 / 00:06.932, 113Mb) Sushi: info Cached hl7.terminology.r4#7.0.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.0 (00:00.001 / 00:06.934, 113Mb) Sushi: info Loaded hl7.terminology.r4#7.0.0 with 4096 resources (00:01.220 / 00:08.155, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.469 / 00:08.624, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:08.625, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.703 / 00:10.329, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:10.330, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.244 / 00:10.575, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:10.575, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.357 / 00:13.933, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.002 / 00:13.935, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.199 / 00:15.135, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.012 / 00:15.147, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.016 / 00:15.164, 113Mb) Sushi: info Converted 4 FHIR StructureDefinitions. (00:00.370 / 00:15.534, 113Mb) Sushi: info Converted 1 FHIR CodeSystems. (00:00.055 / 00:15.589, 113Mb) Sushi: info Converted 2 FHIR ValueSets. (00:00.083 / 00:15.673, 113Mb) Sushi: info Converted 5 FHIR instances. (00:00.583 / 00:16.257, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:16.257, 113Mb) Sushi: info Exported 12 FHIR resources as JSON. (00:00.019 / 00:16.277, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.000 / 00:16.277, 113Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.uv.bulkdata.json (00:00.007 / 00:16.285, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:16.285, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:16.286, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.287, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:16.287, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:16.287, 113Mb) Sushi: | | 1 | 3 | 0 | 0 | | (00:00.000 / 00:16.287, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.287, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.288, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:16.288, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:16.288, 113Mb) Sushi: | | 2 | 1 | 5 | | (00:00.000 / 00:16.288, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.288, 113Mb) Sushi: | | (00:00.000 / 00:16.289, 113Mb) Sushi: =================================================================== (00:00.000 / 00:16.289, 113Mb) Sushi: | That was a sea breeze! 0 Errors 0 Warnings | (00:00.000 / 00:16.289, 113Mb) Sushi: =================================================================== (00:00.000 / 00:16.289, 113Mb) Root directory: /scratch/repo (00:00.027 / 00:16.316, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.566 / 00:16.883, 37Mb) Load Template from #smart-template (00:00.498 / 00:17.381, 78Mb) Load Template from hl7.fhir.template#current (00:00.215 / 00:17.597, 86Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:01.000 / 00:18.598, 149Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.130 / 00:18.728, 149Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.240 / 00:21.968, 148Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:21.969, 148Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-4294402158478624545.html Connect to Terminology Server at http://tx.fhir.org (00:34.969 / 00:56.939, 389Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#7.0.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:07.749 / 01:04.689, 761Mb) Load IG (00:00.000 / 01:04.689, 761Mb) Load Translations (00:00.002 / 01:04.692, 761Mb) Load Content (00:00.000 / 01:04.692, 761Mb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.071 / 01:04.763, 769Mb) Process Loaded Resources (00:00.475 / 01:05.239, 777Mb) Generating Snapshots (00:00.138 / 01:05.377, 801Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/uv/bulkdata/package-list.json for version check (00:00.251 / 01:05.629, 825Mb) Checking Language (00:00.117 / 01:05.747, 825Mb) Load Dependency Info (00:00.001 / 01:05.748, 825Mb) Load Info (00:00.001 / 01:05.749, 825Mb) Load Paths (00:00.000 / 01:05.749, 825Mb) Check R4 / R4B (00:00.000 / 01:05.749, 829Mb) Assign Comparison Ids (00:00.026 / 01:05.776, 837Mb) Propagating status (00:00.000 / 01:05.776, 837Mb) Generating Narratives (00:00.014 / 01:05.790, 837Mb) Validating Conformance Resources (00:00.630 / 01:06.421, 929Mb) Check profiles & code systems (00:09.087 / 01:15.509, 626Mb) Check realm rules (00:00.001 / 01:15.510, 626Mb) Previous Version Comparison (00:00.000 / 01:15.511, 626Mb) Installing hl7.fhir.uv.bulkdata#3.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#3.0.0-ballot  done. Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1  done. Checking for Bundles to sign (00:09.322 / 01:24.833, 1Gb) Validating Resources (00:00.000 / 01:24.834, 1Gb) Processing Provenance Records (00:00.025 / 01:24.860, 1Gb) Generating Translation artifacts (00:00.000 / 01:24.860, 1Gb) Generating Outputs in /scratch/repo/output (00:00.002 / 01:24.862, 1Gb) Generate Native Outputs (00:00.359 / 01:25.222, 1Gb) Run Template (00:00.751 / 01:25.973, 1Gb) Generate HTML Outputs (00:03.394 / 01:29.368, 1Gb) Generate Spreadsheets (00:03.341 / 01:32.710, 1Gb) Generate Summaries (00:01.374 / 01:34.084, 855Mb) Generating Summary Outputs (en) (00:00.001 / 01:34.086, 855Mb) DB Cumulative Time invested: 00:00:00.389 Sending Usage Stats to Server (00:02.291 / 01:36.378, 1Gb) ## Memory (MB): Use = 1408, Free = 17599, Total = 19008, Max = 19008 (00:00.010 / 01:36.388, 1Gb) Reclaiming memory... (00:00.000 / 01:36.389, 1Gb) ## Memory (MB): Use = 720, Free = 18287, Total = 19008, Max = 19008 (00:00.660 / 01:37.049, 728Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 01:37.051, 744Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 01:37.051, 744Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:37.051, 744Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:37.051, 744Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.458 / 01:37.509, 760Mb) Jekyll: Generating... (00:00.000 / 01:37.509, 760Mb) Jekyll: done in 1.24 seconds. (00:01.238 / 01:38.748, 765Mb) Checking Output HTML (00:00.865 / 01:39.614, 960Mb) AI format for /scratch/repo/output/en - % reduction = 94 found 1329 files (00:00.286 / 01:39.900, 1Gb) ........................................ ........................................ ... 1329 html files, 0 pages invalid xhtml (0%) (00:02.429 / 01:42.329, 3Gb) ... 7245 links, 0 broken links (0%) (00:00.000 / 01:42.329, 3Gb) Generate fragment-usage-analysis.csv (00:00.000 / 01:42.329, 3Gb) Build final .zip (00:00.010 / 01:42.340, 3Gb) Final .zip built (00:01.242 / 01:43.583, 3Gb) Built. Times: loading: 00:01.054, generate: 00:38.684, propagating status: 00:00.014, narrative generation: 00:00.630, realm-rules: 00:00.000, previous-version: 00:09.308, jekyll: 00:01.710, validation: 00:09.106 (#13), template: 00:03.407 (#3) (00:00.848 / 01:44.431, 3Gb) Generating QA (00:00.000 / 01:44.432, 3Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links: 0 (00:00.212 / 01:44.644, 3Gb) Finished @ 12/9/25, 1:54 PM. Max Memory Used = 3Gb (00:00.025 / 01:44.670, 3Gb)