INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/CDA-core-2.0 --branch master repo DEBUG:root:Time to deadline 35879.99858 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.625307 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.505702 seconds added 114 packages in 26s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.6.7 -> 10.2.0 npm notice Changelog: npm notice Run `npm install -g npm@10.2.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/CDA-core-2.0/ -out /scratch/repo DEBUG:root:Time to deadline 35851.636449 seconds FHIR IG Publisher Version 1.4.11 (Git# 6a79a4da17c5). Built 2023-10-02T14:44:02.985Z (29 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/CDA-core-2.0/ -out /scratch/repo Start Clock @ Tuesday, October 3, 2023, 8:43:31 PM Coordinated Universal Time (2023-10-03T20:43:31Z) Build FHIR IG from /scratch/repo (00:00.019 / 00:00.019, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.022, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.025, 89Mb) Load Template from hl7.cda.template#current (00:00.476 / 00:00.502, 84Mb) Installing hl7.cda.template#current to the package cache Fetching: Installing hl7.cda.template#current done. Load Template from hl7.base.template#current (00:02.739 / 00:03.241, 94Mb) Installing hl7.base.template#current to the package cache Fetching: Installing hl7.base.template#current done. Load Template from fhir.base.template#current (00:00.233 / 00:03.475, 94Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/repo/template/onLoad-ig-working.xml to /scratch/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onLoad.cda.xslt onLoad.extend: onLoad: Root directory: /scratch/repo (00:03.047 / 00:06.522, 137Mb) Core Package hl7.fhir.r5.core#5.0.0 Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:09.151 / 00:15.673, 344Mb) Connect to Terminology Server at http://tx.fhir.org (00:00.004 / 00:15.678, 344Mb) Installing hl7.fhir.pubpack#0.1.6 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.6 done. Load Package hl7.fhir.pubpack#0.1.6 Installing hl7.fhir.xver-extensions#0.0.12 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.0.12 done. Load Package hl7.fhir.xver-extensions#0.0.12 Installing hl7.fhir.uv.extensions.r5#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r5#1.0.0 done. Load Package hl7.fhir.uv.extensions.r5#1.0.0 Installing hl7.terminology#5.2.0 to the package cache Fetching: Installing hl7.terminology#5.2.0 done. Version mismatch. This IG is version 5.0.0, while the IG 'hl7.terminology' is from version 4.0.1 (will try to run anyway) (00:05.585 / 00:21.263, 772Mb) Ignore Dependency on Core FHIR hl7.fhir.r4.core#4.0.1, from package 'hl7.terminology#5.2.0' (00:00.000 / 00:21.264, 772Mb) Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#1.0.0 done. Ignore Dependency on Core FHIR hl7.fhir.r4.core#4.0.1, from package 'hl7.fhir.uv.extensions.r4#1.0.0' (00:00.716 / 00:21.980, 931Mb) Load Package hl7.fhir.uv.extensions.r4#1.0.0 Load Package hl7.terminology#5.2.0 Installing hl7.fhir.uv.tools#current to the package cache Fetching: Installing hl7.fhir.uv.tools#current done. Load Package hl7.fhir.uv.tools#current Initialization complete (00:02.988 / 00:24.969, 1Gb) Fetch http://hl7.org/cda/stds/core/package-list.json for version check (00:00.003 / 00:24.972, 1Gb) Load Content (00:00.107 / 00:25.080, 1Gb) Error loading /scratch/repo/input/examples/clinicaldocument-example.xml as XML: This content cannot be parsed (unknown or unrecognised XML Root element namespace/name 'urn:hl7-org:v3::ClinicalDocument') at line 0 col 0 (00:00.403 / 00:25.483, 477Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Processing Conformance Resources (00:06.768 / 00:32.252, 1Gb) Load Dependency Info (00:00.003 / 00:32.256, 1Gb) Load Info (00:00.001 / 00:32.258, 1Gb) Load Resources (00:00.000 / 00:32.258, 1Gb) Load Paths (00:03.102 / 00:35.360, 2Gb) Generating Snapshots (00:00.000 / 00:35.361, 2Gb) Check R4 / R4B (00:05.347 / 00:40.709, 4Gb) Propagating status (00:00.007 / 00:40.716, 4Gb) Generating Narratives (00:00.000 / 00:40.717, 4Gb) Validating Conformance Resources (00:00.981 / 00:41.699, 4Gb) Installing hl7.cda.uv.core#2.1.0-draft1 to the package cache Fetching: 2023-10-03 20:44:25.648 [main] INFO o.h.f.u.npm.BasePackageCacheManager [BasePackageCacheManager.java:85] Failed to resolve package hl7.cda.uv.core#2.1.0-draft1 from server: http://packages.fhir.org (Invalid HTTP response 404 from http://packages.fhir.org/hl7.cda.uv.core/2.1.0-draft1 (Not Found) (content in /tmp/http-log/fhir-http-3.log)) Installing hl7.cda.uv.core#2.1.0-draft1 done. Installing hl7.terminology.r5#5.0.0 to the package cache Fetching: Installing hl7.terminology.r5#5.0.0 done. Validating Resources (00:52.750 / 01:34.449, 4Gb) Processing Provenance Records (00:00.595 / 01:35.044, 4Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:35.044, 4Gb) Generate Native Outputs (00:00.409 / 01:35.454, 4Gb) Run Template (00:07.001 / 01:42.456, 6Gb) onGenerate.checkVersions: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/versions.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 20 files to /scratch/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.1.xml to /scratch/repo/template/onGenerate-ig-working.2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.groupSort.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.2.xml to /scratch/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/properties.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/CDA-core.xml [get] To: /scratch/repo/input-cache/jiraspec.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/CDA-core.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/CDA-core.xml [get] Error opening connection java.io.FileNotFoundException: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/CDA-core.xml [get] Can't get https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/CDA-core.xml to /scratch/repo/input-cache/jiraspec.xml onGenerate.jira.packagelistcopy: onGenerate.jira.packagelistget: [get] Getting: http://hl7.org/cda/stds/core/package-list.json [get] To: /scratch/repo/template/onGenerate.jira.workingpackage-list.json onGenerate.jira.packagelistProcess: [xslt] Processing /scratch/repo/template/onGenerate.jira.package-list.tmp.xml to /scratch/repo/template/onGenerate.jira.package-list.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.package-list.xslt onGenerate.jira.packagelistSkip: onGenerate.jira.pubrequestProcess: [xslt] Processing /scratch/repo/template/onGenerate.jira.pubrequest.tmp.xml to /scratch/repo/template/onGenerate.jira.pubrequest.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.pubrequest.xslt onGenerate.jira.pubrequestSkip: onGenerate.jira.generate: [xslt] Processing /scratch/repo/template/onGenerate.jira.tmp.xml to /scratch/repo/template/onGenerate.jira.tmp2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.process-pkg-list.xslt [xslt] Processing /scratch/repo/template/onGenerate.jira.tmp2.xml to /scratch/repo/template/onGenerate.jira.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.jira.xslt [xslt] Processing /scratch/repo/template/onGenerate.jira.xml to /scratch/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.normalize.xslt [xslt] input file /scratch/repo/input-cache/jiraspec.xml does not exist [copy] Copying 1 file to /scratch/repo onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (00:01.464 / 01:43.920, 6Gb) Generate HTML Outputs (00:00.000 / 01:43.921, 6Gb) ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... Generate Summaries (00:17.442 / 02:01.364, 3Gb) Generating Summary Outputs (00:00.000 / 02:01.364, 3Gb) Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.core#4.0.1 done. DB Cumulative Time invested: 0:0:1.416 Sending Usage Stats to Server (00:45.433 / 02:46.798, 2Gb) ## Memory (MB): Use = 2364, Free = 16643, Total = 19008, Max = 19008 Reclaiming memory... ## Memory (MB): Use = 1174, Free = 17833, Total = 19008, Max = 19008 Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.895 / 02:47.693, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.411 / 02:48.105, 1Gb) Jekyll: Generating... (00:00.000 / 02:48.105, 1Gb) Jekyll: done in 4.943 seconds. (00:04.942 / 02:53.047, 1Gb) Checking Output HTML (00:00.971 / 02:54.019, 1Gb) found 2512 files (00:00.008 / 02:54.027, 1Gb) ........................................ ........................................ ... 2512 html files, 0 pages invalid xhtml (0%) (00:19.910 / 03:13.938, 10Gb) ... 260106 links, 0 broken links (0%) (00:00.000 / 03:13.938, 10Gb) Build final .zip (00:00.000 / 03:13.939, 10Gb) Final .zip built (00:02.129 / 03:16.069, 10Gb) Built. Times: loading: 00:07.171, generate: 02:47.106, narrative generation: 00:00.981, realm-rules: 00:00.000, previous-version: 00:41.438, jekyll: 00:05.391, validation: 00:11.859 (#138), template: 00:01.464 (#3) (00:03.299 / 03:19.368, 1Gb) Validation output in /scratch/repo/output/qa.html Errors: 1, Warnings: 1, Info: 8, Broken Links: 0 (00:01.560 / 03:20.928, 2Gb) Finished. Max Memory Used = 10Gb (00:00.023 / 03:20.951, 2Gb)