INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/FHIR/sample-ig --branch master repo DEBUG:root:Time to deadline 35879.997712 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.976286 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.605419 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.4 npm notice Changelog: npm notice Run `npm install -g npm@11.6.4` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/FHIR/sample-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35869.753498 seconds FHIR IG Publisher Version 2.0.27 (Git# 07050daf807f). Built 2025-11-28T20:03:59.255Z (6 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/FHIR/sample-ig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, December 5, 2025, 7:07:02 PM Coordinated Universal Time (2025-12-05T19:07:02Z) Build FHIR IG from /scratch/repo (00:00.030 / 00:00.030, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.034, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.038, 97Mb) Root directory: /scratch/repo (00:00.012 / 00:00.050, 97Mb) Load Template from #local-template (00:01.541 / 00:01.592, 69Mb) Load Template from fhir2.base.template#current (00:00.391 / 00:01.984, 85Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:07.241 / 00:09.226, 147Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.007 / 00:09.233, 147Mb) Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-2842002579126658555.html Connect to Terminology Server at http://tx.fhir.org (00:41.728 / 00:50.962, 583Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#7.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#7.0.0  done. Load Package hl7.terminology.r4#7.0.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing fhir.cqf.common#4.0.1 to the package cache  Fetching:  Installing fhir.cqf.common#4.0.1  done. Installing hl7.fhir.uv.cpg#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cpg#1.0.0  done. Load Package hl7.fhir.uv.cpg#1.0.0 Load Package fhir.cqf.common#4.0.1 Installing hl7.fhir.uv.tools.r4#0.8.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.8.0  done. Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:20.877 / 01:11.839, 458Mb) Load IG (00:00.000 / 01:11.839, 458Mb) Load Translations (00:00.005 / 01:11.845, 458Mb) Load Content (00:00.000 / 01:11.845, 458Mb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.122 / 01:11.968, 466Mb) Translating CQL source (00:00.048 / 01:12.016, 466Mb) Translating CQL source in folder /scratch/repo/input/cql (00:00.000 / 01:12.016, 466Mb) Translating CQL source in file /scratch/repo/input/cql/example.cql (00:00.066 / 01:12.084, 466Mb) CQL translation completed successfully. (00:03.980 / 01:16.064, 453Mb) Translating CQL source in file /scratch/repo/input/cql/notincluded.cql (00:00.000 / 01:16.064, 453Mb) CQL translation completed successfully. (00:00.012 / 01:16.076, 461Mb) org.hl7.fhir.r5.fhirpath.FHIRLexer$FHIRLexerException: Error @1, 2: Found "�" expecting "group" at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:140) at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:136) at org.hl7.fhir.r5.fhirpath.FHIRLexer.token(FHIRLexer.java:408) at org.hl7.fhir.r5.elementmodel.FmlParser.parseGroup(FmlParser.java:271) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:118) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:59) at org.hl7.fhir.igtools.publisher.SimpleFetcher.scan(SimpleFetcher.java:413) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadResources(PublisherIGLoader.java:2914) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:2019) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:385) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:231) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1593) Process Loaded Resources (00:01.511 / 01:17.588, 645Mb) Generating Snapshots (00:00.340 / 01:17.929, 685Mb) Process Additional Loaded Resources (00:00.754 / 01:18.683, 789Mb) Generating Snapshots (00:00.000 / 01:18.683, 789Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://somewhere.org/fhir/uv/myig/package-list.json for version check (00:00.131 / 01:18.815, 797Mb) Checking Language (00:00.159 / 01:18.974, 797Mb) Load Dependency Info (00:00.001 / 01:18.975, 797Mb) Load Info (00:00.001 / 01:18.976, 797Mb) Load Paths (00:00.000 / 01:18.977, 797Mb) Check R4 / R4B (00:00.000 / 01:18.977, 801Mb) Assign Comparison Ids (00:00.028 / 01:19.006, 801Mb) Propagating status (00:00.000 / 01:19.006, 801Mb) Generating Narratives (00:00.023 / 01:19.030, 805Mb) Validating Conformance Resources (00:04.992 / 01:24.022, 1Gb) Check profiles & code systems (00:13.815 / 01:37.838, 712Mb) Check realm rules (00:00.002 / 01:37.840, 712Mb) Previous Version Comparison (00:00.000 / 01:37.840, 712Mb) Checking for Bundles to sign (00:00.025 / 01:37.866, 712Mb) Validating Resources (00:00.000 / 01:37.866, 712Mb) Processing Provenance Records (00:01.149 / 01:39.016, 1Gb) Generating Translation artifacts (00:00.003 / 01:39.019, 1Gb) Generating Outputs in /scratch/repo/output (00:00.135 / 01:39.154, 1Gb) Generate Native Outputs (00:00.757 / 01:39.912, 1Gb) Run Template (00:07.285 / 01:47.198, 1Gb) Generate HTML Outputs (00:01.572 / 01:48.770, 1Gb) Generate Spreadsheets (00:22.431 / 02:11.202, 635Mb) Generate Summaries (00:03.370 / 02:14.572, 954Mb) Generating Summary Outputs (en) (00:00.000 / 02:14.572, 954Mb) Generating Summary Outputs (de) (00:05.230 / 02:19.803, 1Gb) Generating Summary Outputs (fr) (00:04.488 / 02:24.292, 2Gb) DB Cumulative Time invested: 00:00:00.770 Sending Usage Stats to Server (00:04.398 / 02:28.690, 907Mb) ## Memory (MB): Use = 907, Free = 18100, Total = 19008, Max = 19008 (00:00.007 / 02:28.697, 915Mb) Reclaiming memory... (00:00.000 / 02:28.698, 915Mb) ## Memory (MB): Use = 567, Free = 18440, Total = 19008, Max = 19008 (00:00.849 / 02:29.547, 583Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.007 / 02:29.555, 583Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:29.555, 583Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:29.555, 583Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:29.555, 583Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.561 / 02:30.116, 599Mb) Jekyll: Generating... (00:00.000 / 02:30.116, 599Mb) Jekyll: done in 3.955 seconds. (00:03.954 / 02:34.071, 599Mb) Checking Output HTML (00:02.194 / 02:36.265, 1Gb) AI format for /scratch/repo/output/en - % reduction = 99 AI format for /scratch/repo/output/de - % reduction = 99 AI format for /scratch/repo/output/fr - % reduction = 99 found 3077 files (00:02.091 / 02:38.356, 2Gb) ........................................ ........................................ ... 3077 html files, 0 pages invalid xhtml (0%) (00:31.634 / 03:09.991, 613Mb) ... 146670 links, 21 broken links (0%) (00:00.000 / 03:09.991, 613Mb) Generate fragment-usage-analysis.csv (00:00.000 / 03:09.992, 613Mb) Build final .zip (00:00.009 / 03:10.001, 613Mb) Final .zip built (00:05.824 / 03:15.826, 627Mb) Built. Times: loading: 00:07.129, generate: 01:59.478, propagating status: 00:00.023, narrative generation: 00:04.991, realm-rules: 00:00.000, previous-version: 00:00.000, jekyll: 00:04.540, validation: 00:14.935 (#20), template: 00:01.585 (#3) (00:02.626 / 03:18.453, 947Mb) Generating QA (00:00.000 / 03:18.453, 947Mb) Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/input/cql/notincluded.cql', err = 'CQL source was not associated with a library resource in the IG.' Validation output in /scratch/repo/output/qa.html Errors: 43, Warnings: 34, Info: 11, Broken Links: 21 (00:00.480 / 03:18.934, 987Mb) Finished @ 12/5/25, 7:10 PM. Max Memory Used = 2Gb (00:00.038 / 03:18.973, 987Mb)