INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/FHIR/ig-guidance --branch master repo DEBUG:root:Time to deadline 35879.997982 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.178556 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.055872 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 8s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.4 npm notice Changelog: npm notice Run `npm install -g npm@11.6.4` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/FHIR/ig-guidance/ -out /scratch/repo DEBUG:root:Time to deadline 35869.94892 seconds FHIR IG Publisher Version 2.0.26 (Git# 0a43ac207d1f). Built 2025-11-06T09:21:35.314Z (19 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/FHIR/ig-guidance/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, November 25, 2025, 10:19:16 PM Coordinated Universal Time (2025-11-25T22:19:16Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.028, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.030, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.034, 97Mb) Root directory: /scratch/repo (00:00.006 / 00:00.040, 97Mb) Load Template from fhir.base.template#current (00:00.771 / 00:00.812, 37Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:06.793 / 00:07.605, 141Mb) Core Package hl7.fhir.r5.core#5.0.0 (00:00.001 / 00:07.607, 141Mb) Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Running Terminology Log: /tmp/ohfu-fhir-ig-3717848283966607810.html Connect to Terminology Server at http://tx.fhir.org (00:11.410 / 00:19.017, 473Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r5#7.0.0 to the package cache  Fetching:  Installing hl7.terminology.r5#7.0.0  done. Load Package hl7.terminology.r5#7.0.0 Installing hl7.fhir.uv.extensions.r5#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r5#5.2.0  done. Load Package hl7.fhir.uv.extensions.r5#5.2.0 Installing hl7.fhir.uv.tools.r5#0.8.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r5#0.8.0  done. Load Package hl7.fhir.uv.tools.r5#0.8.0 Initialization complete (00:08.777 / 00:27.795, 482Mb) Load IG (00:00.000 / 00:27.795, 482Mb) Load Content (00:00.003 / 00:27.798, 484Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.054 / 00:27.853, 490Mb) Process Loaded Resources (00:00.458 / 00:28.311, 498Mb) Generating Snapshots (00:00.139 / 00:28.450, 506Mb) Execute Test Data Factory 'LiquidDemo'. Log in LiquidDemo.log (00:03.715 / 00:32.166, 938Mb) Execute Test Data Factory 'PatientGenerator'. Log in PatientGenerator.log (00:01.163 / 00:33.330, 1Gb) Execute Test Data Factory 'EncounterGenerator'. Log in EncounterGenerator.log (00:02.545 / 00:35.875, 1Gb) Execute Test Data Factory 'BloodPressureGenerator'. Log in BloodPressureGenerator.log (00:00.142 / 00:36.018, 1Gb) Execute Test Data Factory 'WeightGenerator'. Log in WeightGenerator.log (00:00.503 / 00:36.522, 1Gb) Execute Test Data Factory 'WarfarinGenerator'. Log in WarfarinGenerator.log (00:00.257 / 00:36.779, 1Gb) Process Additional Loaded Resources (00:01.123 / 00:37.903, 1Gb) Generating Snapshots (00:00.001 / 00:37.904, 1Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/uv/howto/package-list.json for version check (00:00.061 / 00:37.965, 1Gb) Checking Language (00:00.163 / 00:38.129, 1Gb) Load Dependency Info (00:00.001 / 00:38.130, 1Gb) Load Info (00:00.001 / 00:38.131, 1Gb) Load Paths (00:00.000 / 00:38.132, 1Gb) Check R4 / R4B (00:00.000 / 00:38.132, 1Gb) Assign Comparison Ids (00:00.021 / 00:38.154, 1Gb) Propagating status (00:00.000 / 00:38.154, 1Gb) Generating Narratives (00:00.000 / 00:38.154, 1Gb) Validating Conformance Resources (00:03.170 / 00:41.325, 730Mb) Check profiles & code systems (00:03.796 / 00:45.121, 788Mb) Check realm rules (00:00.001 / 00:45.123, 788Mb) Previous Version Comparison (00:00.000 / 00:45.123, 788Mb) Checking for Bundles to sign (00:00.016 / 00:45.140, 796Mb) Validating Resources (00:00.183 / 00:45.323, 796Mb) Processing Provenance Records (00:01.928 / 00:47.252, 948Mb) Generating Outputs in /scratch/repo/output (00:00.000 / 00:47.252, 948Mb) Generate Native Outputs (00:00.310 / 00:47.562, 964Mb) Generate View input/sql/sql-view-valueset.json (00:00.961 / 00:48.524, 1Gb) Run Template (00:38.768 / 01:27.292, 1Gb) Generate HTML Outputs (00:02.377 / 01:29.670, 1Gb) Generate Spreadsheets (00:03.904 / 01:33.575, 1Gb) Generate Summaries (00:01.054 / 01:34.629, 1Gb) Generating Summary Outputs (00:00.000 / 01:34.629, 1Gb) DB Cumulative Time invested: 00:00:00.391 Sending Usage Stats to Server (00:02.436 / 01:37.065, 1Gb) ## Memory (MB): Use = 1774, Free = 17233, Total = 19008, Max = 19008 (00:00.007 / 01:37.072, 1Gb) Reclaiming memory... (00:00.000 / 01:37.073, 1Gb) ## Memory (MB): Use = 469, Free = 18538, Total = 19008, Max = 19008 (00:00.629 / 01:37.702, 477Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.007 / 01:37.710, 483Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.009 / 01:37.720, 483Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:37.720, 483Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:37.720, 483Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.530 / 01:38.251, 485Mb) Jekyll: Generating... (00:00.000 / 01:38.251, 485Mb) Jekyll: done in 1.371 seconds. (00:01.370 / 01:39.621, 485Mb) Checking Output HTML (00:00.196 / 01:39.818, 533Mb) Processed /scratch/repo/output - % reduction = 93 (5687295 ==> 401627) found 939 files (00:00.524 / 01:40.343, 749Mb) ........................................ ........................................ ... 939 html files, 0 pages invalid xhtml (0%) (00:04.380 / 01:44.724, 1Gb) ... 22749 links, 16 broken links (0%) (00:00.000 / 01:44.724, 1Gb) Generate fragment-usage-analysis.csv (00:00.000 / 01:44.724, 1Gb) Build final .zip (00:00.010 / 01:44.735, 1Gb) Final .zip built (00:00.813 / 01:45.548, 1Gb) Built. Times: loading: 00:10.330, generate: 01:08.538, narrative generation: 00:03.170, realm-rules: 00:00.000, previous-version: 00:00.000, jekyll: 00:01.933, validation: 00:05.720 (#26), template: 00:02.390 (#3) (00:01.119 / 01:46.667, 2Gb) Generating QA (00:00.000 / 01:46.668, 2Gb) Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/output/StructureDefinition-test-patient-profile-mappings.html', err = 'The html source has duplicate anchor Ids: Patient,Patient.active,Patient.address,Patient.birthDate,P' Validation output in /scratch/repo/output/qa.html Errors: 62, Warnings: 58, Info: 37, Broken Links: 17 (00:00.482 / 01:47.150, 2Gb) Finished @ 11/25/25, 10:21 PM. Max Memory Used = 2Gb (00:00.034 / 01:47.184, 2Gb)