Australian Digital Health Agency FHIR Implementation Guide
1.2.0-ci-build - draft Australia flag

Australian Digital Health Agency FHIR Implementation Guide, published by Australian Digital Health Agency. This guide is not an authorized publication; it is the continuous build for version 1.2.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/AuDigitalHealth/ci-fhir-r4/ and changes regularly. See the Directory of published versions

: Pathology Report Document Bundle SARS-CoV-2 (COVID-19) PCR for Mrs Anne Thompson - XML Representation

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<Bundle xmlns="http://hl7.org/fhir">
  <id value="report-covid-doc-01"/>
  <meta>
    <lastUpdated value="2022-03-17T11:46:00+10:00"/>
    <profile
             value="http://ns.electronichealth.net.au/fhir/StructureDefinition/dh-bundle-document-1"/>
  </meta>
  <identifier>
    <system value="urn:ietf:rfc:3986"/>
    <value value="urn:uuid:b487469d-810c-40ae-b5a9-c0beb9001c9f"/>
  </identifier>
  <type value="document"/>
  <timestamp value="2022-03-17T11:46:00+10:00"/>
  <!--     Composition     -->
  <entry>
    <fullUrl value="urn:uuid:ddba0aed-3f03-429e-baa1-d5d465cc1d00"/>
    <resource>
      <Composition>
        <id value="1bf8dc5a-f11c-4417-a19d-39826e487cf4"/>
        <language value="en-AU"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml" xml:lang="en-AU" lang="en-AU"><a name="Composition_1bf8dc5a-f11c-4417-a19d-39826e487cf4"> </a><p class="res-header-id"><b>Generated Narrative: Composition 1bf8dc5a-f11c-4417-a19d-39826e487cf4</b></p><a name="1bf8dc5a-f11c-4417-a19d-39826e487cf4"> </a><a name="hc1bf8dc5a-f11c-4417-a19d-39826e487cf4"> </a><a name="1bf8dc5a-f11c-4417-a19d-39826e487cf4-en-AU"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Language: en-AU</p></div><p><b>identifier</b>: <a href="http://terminology.hl7.org/5.0.0/NamingSystem-uri.html" title="As defined by RFC 3986 (http://www.ietf.org/rfc/rfc3986.txt)(with many schemes defined in many RFCs). For OIDs and UUIDs, use the URN form (urn:oid:(note: lowercase) and urn:uuid:). See http://www.ietf.org/rfc/rfc3001.txt and http://www.ietf.org/rfc/rfc4122.txt 

This oid is used as an identifier II.root to indicate the the extension is an absolute URI (technically, an IRI). Typically, this is used for OIDs and GUIDs. Note that when this OID is used with OIDs and GUIDs, the II.extension should start with urn:oid or urn:uuid: 

Note that this OID is created to aid with interconversion between CDA and FHIR - FHIR uses urn:ietf:rfc:3986 as equivalent to this OID. URIs as identifiers appear more commonly in FHIR.

This OID may also be used in CD.codeSystem.">URI</a>/urn:uuid:9cb8267f-fcfd-4341-bc89-e53e4ce9646c</p><p><b>status</b>: Final</p><p><b>type</b>: <span title="Codes:{https://healthterminologies.gov.au/fhir/CodeSystem/nctis-data-components-1 100.32001}">Pathology Report</span></p><p><b>category</b>: <span title="Codes:{https://healthterminologies.gov.au/fhir/CodeSystem/nctis-data-components-1 100.32001}">Pathology Report</span></p><p><b>date</b>: 2021-02-15 20:00:00+1000</p><p><b>author</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-0a8c38d1-b44c-4996-ae39-6a1c05a3489c">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p><p><b>title</b>: SARS-CoV-2 (COVID-19) PCR for Mrs. Anne THOMPSON</p><p><b>custodian</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-b56e2c36-36a7-4907-9751-1fdb438ca860">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p></div>
        </text>
        <identifier>
          <system value="urn:ietf:rfc:3986"/>
          <value value="urn:uuid:9cb8267f-fcfd-4341-bc89-e53e4ce9646c"/>
        </identifier>
        <status value="final"/>
        <type>
          <coding>
            <system
                    value="https://healthterminologies.gov.au/fhir/CodeSystem/nctis-data-components-1"/>
            <code value="100.32001"/>
          </coding>
          <text value="Pathology Report"/>
        </type>
        <category>
          <coding>
            <system
                    value="https://healthterminologies.gov.au/fhir/CodeSystem/nctis-data-components-1"/>
            <code value="100.32001"/>
          </coding>
        </category>
        <subject>
          <reference value="urn:uuid:bccc1479-bcd8-4478-a433-b271576003e3"/>
          <identifier>
            <type>
              <coding>
                <system
                        value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                <code value="NI"/>
                <display value="National unique individual identifier"/>
              </coding>
              <text value="IHI"/>
            </type>
            <system value="http://ns.electronichealth.net.au/id/hi/ihi/1.0"/>
            <value value="8003608000228445"/>
          </identifier>
        </subject>
        <date value="2021-02-15T20:00:00+10:00"/>
        <author>
          <reference value="urn:uuid:0a8c38d1-b44c-4996-ae39-6a1c05a3489c"/>
        </author>
        <title value="SARS-CoV-2 (COVID-19) PCR for Mrs. Anne THOMPSON"/>
        <custodian>
          <reference value="urn:uuid:b56e2c36-36a7-4907-9751-1fdb438ca860"/>
        </custodian>
        <section>
          <title value="Pathology"/>
          <code>
            <coding>
              <system
                      value="https://healthterminologies.gov.au/fhir/CodeSystem/nctis-data-components-1"/>
              <code value="101.20018"/>
              <display value="Pathology"/>
            </coding>
            <coding>
              <system value="http://loinc.org"/>
              <code value="11526-1"/>
              <display value="Pathology study"/>
            </coding>
          </code>
          <text>
            <status value="additional"/>
            <div xmlns="http://www.w3.org/1999/xhtml" lang="en-AU">
                            <table border="1">
                                <caption>Report Details</caption>
                                <thead>
                                    <tr>
                                        <th>Report Date/Time</th>
                                        <th>Report Name</th>
                                        <th>Report Status</th>
                                        <th>Lab No</th>
                                        <th>Consultant</th>
                                    </tr>
                                </thead>
                                <tbody>
                                    <tr>
                                        <td>15-Feb-2021 20:00</td>
                                        <td>SARS-CoV-2 (COVID-19) PCR for Mrs. Anne THOMPSON</td>
                                        <td>Final</td>
                                        <td>DOO3Q978</td>
                                        <td>Dr. Adam MEYER (Microbiologist) (07) 7010 3453</td>
                                    </tr>
                                </tbody>
                            </table>
                            <table border="1">
                                <caption>SARS-Cov-2 (COVID-19) PCR</caption>
                                <thead>
                                    <tr>
                                        <th>Specimen Type</th>
                                        <th>Primary Specimen Site</th>
                                        <th>Collection Setting</th>
                                        <th>Date Collected</th>
                                        <th>Time Collected</th>
                                        <th>Test Name</th>
                                        <th>Result</th>
                                        <th>Diagnostic Service</th>
                                    </tr>
                                </thead>
                                <tbody>
                                    <tr>
                                        <td>Swab</td>
                                        <td>Nasopharyngeal</td>
                                        <td>COVID HSC Assessment Clinic</td>
                                        <td>15-Feb-2021</td>
                                        <td>12:00</td>
                                        <td>SARS-CoV-2 PCR</td>
                                        <td>Not Detected</td>
                                        <td>Microbiology</td>
                                    </tr>
                                </tbody>
                            </table>
                            <table>
                                <caption>Comments</caption>
                                <tbody>
                                    <tr>
                                        <td>Doomben Pathology QLD NATA/RCPA accreditation does not cover the SARS-CoV-2 (COVID-19) PCR test.</td>
                                    </tr>
                                    <tr>
                                        <td>This test is currently under evaluation and has not been fully validated. Failure to detect
                                            organism-specific nucleic acids does not exclude the presence of disease due to this agent.</td>
                                    </tr>
                                </tbody>
                            </table>
                            <p>
                                <a href="https://github.com/AuDigitalHealth/ci-fhir-r4/tree/master/examples/DOO3Q978.pdf">Link to PDF document</a>
                            </p>
                        </div>
          </text>
          <entry>
            <reference value="urn:uuid:a790bf00-6c3f-4acd-b786-b5b713f67ce2"/>
          </entry>
        </section>
      </Composition>
    </resource>
  </entry>
  <!-- DiagnosticReport covid-01 -->
  <entry>
    <fullUrl value="urn:uuid:a790bf00-6c3f-4acd-b786-b5b713f67ce2"/>
    <resource>
      <DiagnosticReport>
        <id value="covid-01"/>
        <language value="en-AU"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml" lang="en-AU">
                        <table style="border-collapse:collapse;border-spacing:0;width:100%;background-color:#000000">
                            <tr>
                                <th colspan="9" style="padding-top: 40px;                                     vertical-align: top;                                     text-align: center;                                     margin 0px;                                     font-size: 20px;                                     font-family: Helvetica;                                     color: #FFFFFF;                                     font-weight: bold;                                     word-wrap: break-word;">Pathology Report</th>
                            </tr>
                            <tr>
                                <td colspan="9" style="vertical-align: top;                                     text-align: center;                                     margin 0px;                                     font-size: 15px;                                     font-family: Helvetica;                                     color: #FFFFFF;                                     font-weight: bold;">15 Feb 2021 12:00</td>
                            </tr>
                            <tr>
                                <td style="display: inline;                                      margin-right: 20px;                                      font-size: 13px;                                     color: #FFFFFF;">Mrs. Anne <span class="bold">THOMPSON</span></td>
                                <td style="display: inline;                                     font-size: 11px;                                     color: #FFFFFF;">DoB</td>
                                <td style="margin-left: 0px;                                     display: inline;                                     font-size: 11px;                                     margin-right: 30px;                                     color: #FFFFFF;">11 OCT 1978</td>
                                <td style="display: inline;                                     font-size: 11px;                                     color: #FFFFFF;">GENDER</td>
                                <td style="margin-left: 0px;                                     display: inline;                                     font-size: 11px;                                     margin-right: 30px;                                     color: #FFFFFF;">Female</td>
                                <td style="display: inline;                                     font-size: 11px;                                     color: #FFFFFF;">IHI</td>
                                <td style="margin-left: 0px;                                     display: inline;                                     font-size: 11px;                                     margin-right: 30px;                                     color: #FFFFFF;">8003 6080 0022 8437</td>
                                <td style="display: inline;                         font-size: 11px;                         color: #FFFFFF;">MRN</td>
                                <td style="margin-left: 0px;                         display: inline;                         font-size: 11px;                         margin-right: 30px;                         color: #FFFFFF;">123456</td>
                                <td style="display: inline;                                     font-size: 11px;                                     color: #FFFFFF;">INDIGENOUS STATUS</td>
                                <td style="margin-left: 0px;                                     display: inline;                                     font-size: 11px;                                     margin-right: 30px;                                     color: #FFFFFF;                                     word-wrap: break-word;">Aboriginal but not Torres Strait Islander origin</td>
                            </tr>
                        </table>
                        <table style="width:100%">
                            <tbody>
                                <tr>
                                    <td style="width:50%">
                                        <table>
                                            <thead>
                                                <tr>
                                                  <th colspan="2" style="padding-top: 15px;                                                         vertical-align: top;                                                         text-align: center;                                                         margin 0px;                                                         font-family: Helvetica;                                                         font-size:14px;                                                         font-weight: bold;                                                         text-decoration: underline;                                                         text-align: left;                                                         word-wrap: break-word;">Request Details</th>
                                                </tr>
                                            </thead>
                                            <tbody>
                                                <tr>
                                                  <td>Dr Greg Algregster (Algregster Medical Center
                                                  QLD)</td>
                                                </tr>
                                                <tr>
                                                  <td style="font-weight: bold;">Order
                                                  Identifier:</td>
                                                  <td>123451</td>
                                                </tr>
                                                <tr>
                                                  <td style="font-weight: bold;">Test Ordered:</td>
                                                  <td>2019-Novel Coronavirus PCR</td>
                                                </tr>
                                            </tbody>
                                        </table>
                                    </td>
                                    <td>
                                        <table>
                                            <thead>
                                                <tr>
                                                  <th colspan="2" style="padding-top: 15px;                                                         vertical-align: top;                                                         text-align: center;                                                         margin 0px;                                                         font-family: Helvetica;                                                         font-size:14px;                                                         font-weight: bold;                                                         text-decoration: underline;                                                         text-align: left;                                                         word-wrap: break-word;">Author</th>
                                                </tr>
                                            </thead>
                                            <tbody>
                                                <tr>
                                                  <td>Dr Adam Meyer (Microbiologist) (HPI-I:
                                                  8003619900041630)</td>
                                                </tr>
                                                <tr>
                                                  <td>75 Hampden St, DOOMBEN, QLD, 4007</td>
                                                </tr>
                                                <tr>
                                                  <td>(07) 7010 3453</td>
                                                </tr>
                                                <tr>
                                                  <td/>
                                                </tr>
                                                <tr>
                                                  <td>Doomben Pathology QLD (HPI-O:
                                                  8003623233366565) (NATA: 100101)</td>
                                                </tr>
                                                <tr>
                                                  <td>75 Hampden St, DOOMBEN, QLD, 4007</td>
                                                </tr>
                                                <tr>
                                                  <td>(07) 5550 3427
                                                  info@doombenpathlabs.example.com</td>
                                                </tr>
                                            </tbody>
                                        </table>
                                    </td>
                                </tr>
                                <tr>
                                    <td>
                                        <table>
                                            <thead>
                                                <tr>
                                                  <th colspan="2" style="padding-top: 15px;                                                         vertical-align: top;                                                         text-align: center;                                                         margin 0px;                                                         font-family: Helvetica;                                                         font-size:14px;                                                         font-weight: bold;                                                         text-decoration: underline;                                                         text-align: left;                                                         word-wrap: break-word;">Report Details</th>
                                                </tr>
                                            </thead>
                                            <tbody>
                                                <tr>
                                                  <td style="font-weight: bold;">Report
                                                  Date/Time:</td>
                                                  <td>15 Feb 2021 20:00</td>
                                                </tr>
                                                <tr>
                                                  <td style="font-weight: bold;">Report Name:</td>
                                                  <td>SARS-Cov-2 (COVID-19) PCR for Mrs. Anne
                                                  THOMPSON</td>
                                                </tr>
                                                <tr>
                                                  <td style="font-weight: bold;">Lab No:</td>
                                                  <td>DOO3Q978</td>
                                                </tr>
                                                <tr>
                                                  <td style="font-weight: bold;">Report Status:</td>
                                                  <td>Final</td>
                                                </tr>
                                                <tr>
                                                  <td style="font-weight: bold;">Diagnostice
                                                  Service(s):</td>
                                                  <td>Microbiology</td>
                                                </tr>
                                            </tbody>
                                        </table>
                                    </td>
                                </tr>
                            </tbody>
                        </table>
                        <h1 style=" width: 100%;                             font-size: 17px;                             font-weight: bold;                             color: #000000;                             margin-bottom: 5px;                             margin-top: 0px;                             border-bottom: 1px SOLID #000000;;                             padding: 0px;                             word-wrap: break-word;">Test Results</h1>
                        <table style="border-collapse:collapse;border-spacing:0;width:100%;">
                            <thead>
                                <tr>
                                    <th>
                                        <tr>
                                            <th style="padding-top: 15px;                                     vertical-align: top;                                     text-align: center;                                     margin 0px;                                     font-family: Helvetica;                                     font-weight: bold;                                     text-decoration: underline;                                     text-align: left;                                     word-wrap: break-word;">Diagnostic Service</th>
                                            <th style="padding-top: 15px;                                             vertical-align: top;                                             text-align: center;                                             margin 0px;                                             font-family: Helvetica;                                             font-weight: bold;                                             text-decoration: underline;                                             text-align: left;                                             word-wrap: break-word;">Test Name</th>
                                            <th style="padding-top: 15px;                                     vertical-align: top;                                     text-align: center;                                     margin 0px;                                     font-family: Helvetica;                                     font-weight: bold;                                     text-decoration: underline;                                     text-align: left;                                     word-wrap: break-word;">Result</th>
                                            <th style="padding-top: 15px;                                             vertical-align: top;                                             text-align: center;                                             margin 0px;                                             font-family: Helvetica;                                             font-weight: bold;                                             text-decoration: underline;                                             text-align: left;                                             word-wrap: break-word;">Collection Date/Time</th>
                                            <th style="padding-top: 15px;                                     vertical-align: top;                                     text-align: center;                                     margin 0px;                                     font-family: Helvetica;                                     font-weight: bold;                                     text-decoration: underline;                                     text-align: left;                                     word-wrap: break-word;">Specimen Type</th>
                                            <th style="padding-top: 15px;                                     vertical-align: top;                                     text-align: center;                                     margin 0px;                                     font-family: Helvetica;                                     font-weight: bold;                                     text-decoration: underline;                                     text-align: left;                                     word-wrap: break-word;">Primary Specimen Site</th>
                                            <th style="padding-top: 15px;                                     vertical-align: top;                                     text-align: center;                                     margin 0px;                                     font-family: Helvetica;                                     font-weight: bold;                                     text-decoration: underline;                                     text-align: left;                                     word-wrap: break-word;">Collection Setting</th>
                                        </tr>
                                    </th>
                                </tr>
                            </thead>
                            <tbody>
                                <tbody>
                                    <tr>
                                        <td>Microbiology</td>
                                        <td>2019-Novel Coronavirus PCR</td>
                                        <td>Not Detected</td>
                                        <td>16 Mar 2020 10:40:00</td>
                                        <td>Swab</td>
                                        <td>Nasopharyngeal</td>
                                        <td>COVID HSC Assessment Clinic</td>
                                    </tr>
                                </tbody>
                            </tbody>
                        </table>
                        <p>
                            <a href="https://github.com/AuDigitalHealth/ci-fhir-r4/tree/master/examples/DOO3Q978.pdf">Link to PDF document</a>
                        </p>
                    </div>
        </text>
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          <type>
            <coding>
              <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
              <code value="FILL"/>
              <display value="Filler Identifier"/>
            </coding>
          </type>
          <system
                  value="http://ns.electronichealth.net.au/id/hpio-scoped/report/1.0/8003623233366565"/>
          <value value="DOO3Q978"/>
        </identifier>
        <basedOn>
          <reference value="urn:uuid:dbd0afa4-8c3a-48cd-9fc9-72cf2f06adae"/>
        </basedOn>
        <status value="final"/>
        <category>
          <coding>
            <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
            <code value="LAB"/>
          </coding>
        </category>
        <category>
          <coding>
            <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
            <code value="MB"/>
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        </category>
        <code>
          <coding>
            <system value="http://loinc.org"/>
            <code value="94309-2"/>
          </coding>
          <text value="2019-Novel Coronavirus PCR"/>
        </code>
        <subject>
          <reference value="urn:uuid:bccc1479-bcd8-4478-a433-b271576003e3"/>
          <identifier>
            <type>
              <coding>
                <system
                        value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                <code value="NI"/>
                <display value="National unique individual identifier"/>
              </coding>
              <text value="IHI"/>
            </type>
            <system value="http://ns.electronichealth.net.au/id/hi/ihi/1.0"/>
            <value value="8003608000228445"/>
          </identifier>
        </subject>
        <effectiveDateTime value="2021-02-15T12:00:00+10:00"/>
        <issued value="2021-02-15T20:00:00+10:00"/>
        <performer>
          <reference value="urn:uuid:0a8c38d1-b44c-4996-ae39-6a1c05a3489c"/>
        </performer>
        <performer>
          <reference value="urn:uuid:b56e2c36-36a7-4907-9751-1fdb438ca860"/>
        </performer>
        <result>
          <reference value="urn:uuid:928aec02-866c-4b8b-a0fe-75e640a44d73"/>
        </result>
        <presentedForm>
          <contentType value="application/pdf"/>
          <!--  Placeholder url value: Absolute URL to GitHub repository for attachment is provided as a workaround for demonstration purposes only   -->
          <url value="pathresult.pdf"/>
          <hash value="9F692CB7D03EE6FE8E0500740446262F55FBADBC"/>
          <title value="2019-Novel Coronavirus PCR Report"/>
        </presentedForm>
      </DiagnosticReport>
    </resource>
  </entry>
  <!--  Observation covid-01 -->
  <entry>
    <fullUrl value="urn:uuid:928aec02-866c-4b8b-a0fe-75e640a44d73"/>
    <resource>
      <Observation>
        <id value="covid-01"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_covid-01"> </a><p class="res-header-id"><b>Generated Narrative: Observation covid-01</b></p><a name="covid-01"> </a><a name="hccovid-01"> </a><a name="covid-01-en-AU"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 MB}">Microbiology</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 94309-2}">2019-Novel Coronavirus PCR</span></p><p><b>subject</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-bccc1479-bcd8-4478-a433-b271576003e3">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p><p><b>effective</b>: 2021-02-15 12:00:00+1000</p><p><b>performer</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-b56e2c36-36a7-4907-9751-1fdb438ca860">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p><p><b>value</b>: <span title="Codes:{http://snomed.info/sct 260415000}">Not detected</span></p><p><b>note</b>: Doomben Pathology QLD NATA/RCPA accreditation does not cover the SARS-CoV-2 (COVID-19) PCR test., This test is currently under evaluation and has not been fully validated. Failure to detect organism-specific nucleic acids does not exclude the presence of disease due to this agent.</p><p><b>specimen</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-093f1be9-157d-4602-aa31-f8b658036893">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p></div>
        </text>
        <status value="final"/>
        <category>
          <coding>
            <system
                    value="http://terminology.hl7.org/CodeSystem/observation-category"/>
            <code value="laboratory"/>
          </coding>
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        <category>
          <coding>
            <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
            <code value="MB"/>
          </coding>
        </category>
        <code>
          <coding>
            <system value="http://loinc.org"/>
            <code value="94309-2"/>
          </coding>
          <text value="2019-Novel Coronavirus PCR"/>
        </code>
        <subject>
          <reference value="urn:uuid:bccc1479-bcd8-4478-a433-b271576003e3"/>
          <identifier>
            <type>
              <coding>
                <system
                        value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                <code value="NI"/>
                <display value="National unique individual identifier"/>
              </coding>
              <text value="IHI"/>
            </type>
            <system value="http://ns.electronichealth.net.au/id/hi/ihi/1.0"/>
            <value value="8003608000228445"/>
          </identifier>
        </subject>
        <effectiveDateTime value="2021-02-15T12:00:00+10:00"/>
        <performer>
          <reference value="urn:uuid:b56e2c36-36a7-4907-9751-1fdb438ca860"/>
        </performer>
        <valueCodeableConcept>
          <coding>
            <system value="http://snomed.info/sct"/>
            <code value="260415000"/>
            <display value="Not detected"/>
          </coding>
          <text value="Not detected"/>
        </valueCodeableConcept>
        <note>
          <text
                value="Doomben Pathology QLD NATA/RCPA accreditation does not cover the SARS-CoV-2 (COVID-19) PCR test."/>
        </note>
        <note>
          <text
                value="This test is currently under evaluation and has not been fully validated. Failure to detect organism-specific nucleic acids does not exclude the presence of disease due to this agent."/>
        </note>
        <specimen>
          <reference value="urn:uuid:093f1be9-157d-4602-aa31-f8b658036893"/>
        </specimen>
      </Observation>
    </resource>
  </entry>
  <!--  Specimen naso-swab-01 -->
  <entry>
    <fullUrl value="urn:uuid:093f1be9-157d-4602-aa31-f8b658036893"/>
    <resource>
      <Specimen>
        <id value="naso-swab-01"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml"><a name="Specimen_naso-swab-01"> </a><p class="res-header-id"><b>Generated Narrative: Specimen naso-swab-01</b></p><a name="naso-swab-01"> </a><a name="hcnaso-swab-01"> </a><a name="naso-swab-01-en-AU"> </a><p><b>type</b>: <span title="Codes:{http://snomed.info/sct 257261003}">Swab</span></p><p><b>subject</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-bccc1479-bcd8-4478-a433-b271576003e3">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p><h3>Collections</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Collected[x]</b></td><td><b>BodySite</b></td></tr><tr><td style="display: none">*</td><td>2021-02-15 12:00:00+1000</td><td><span title="Codes:{http://snomed.info/sct 71836000}">Nasopharyngeal</span></td></tr></table><p><b>note</b>: Collection Setting COVID HSC Assessment Clinic</p></div>
        </text>
        <type>
          <coding>
            <system value="http://snomed.info/sct"/>
            <code value="257261003"/>
            <display value="Swab"/>
          </coding>
        </type>
        <subject>
          <reference value="urn:uuid:bccc1479-bcd8-4478-a433-b271576003e3"/>
          <identifier>
            <type>
              <coding>
                <system
                        value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                <code value="NI"/>
                <display value="National unique individual identifier"/>
              </coding>
              <text value="IHI"/>
            </type>
            <system value="http://ns.electronichealth.net.au/id/hi/ihi/1.0"/>
            <value value="8003608000228445"/>
          </identifier>
        </subject>
        <collection>
          <collectedDateTime value="2021-02-15T12:00:00+10:00"/>
          <bodySite>
            <coding>
              <system value="http://snomed.info/sct"/>
              <code value="71836000"/>
              <display value="Nasopharyngeal structure"/>
            </coding>
            <text value="Nasopharyngeal"/>
          </bodySite>
        </collection>
        <note>
          <text value="Collection Setting COVID HSC Assessment Clinic"/>
        </note>
      </Specimen>
    </resource>
  </entry>
  <!-- ServiceRequest order-covid-01 -->
  <entry>
    <fullUrl value="urn:uuid:dbd0afa4-8c3a-48cd-9fc9-72cf2f06adae"/>
    <resource>
      <ServiceRequest>
        <id value="order-covid-01"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml"><a name="ServiceRequest_order-covid-01"> </a><p class="res-header-id"><b>Generated Narrative: ServiceRequest order-covid-01</b></p><a name="order-covid-01"> </a><a name="hcorder-covid-01"> </a><a name="order-covid-01-en-AU"> </a><p><b>identifier</b>: Placer Identifier/123451</p><p><b>status</b>: Completed</p><p><b>intent</b>: Order</p><p><b>category</b>: <span title="Codes:{http://snomed.info/sct 310074003}">Pathology service</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 MB}">Microbiology</span></p><p><b>code</b>: <span title="Codes:">2019-Novel Coronavirus PCR</span></p><p><b>subject</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-bccc1479-bcd8-4478-a433-b271576003e3">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p><p><b>requester</b>: Dr Greg Algregster (Algregster Medical Center QLD)</p></div>
        </text>
        <identifier>
          <type>
            <coding>
              <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
              <code value="PLAC"/>
              <display value="Placer Identifier"/>
            </coding>
          </type>
          <system
                  value="http://ns.electronichealth.net.au/id/hpio-scoped/order/1.0/8003626566699742"/>
          <value value="123451"/>
        </identifier>
        <status value="completed"/>
        <intent value="order"/>
        <category>
          <coding>
            <system value="http://snomed.info/sct"/>
            <code value="310074003"/>
            <display value="Pathology service"/>
          </coding>
        </category>
        <category>
          <coding>
            <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
            <code value="MB"/>
          </coding>
        </category>
        <code>
          <text value="2019-Novel Coronavirus PCR"/>
        </code>
        <subject>
          <reference value="urn:uuid:bccc1479-bcd8-4478-a433-b271576003e3"/>
          <identifier>
            <type>
              <coding>
                <system
                        value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
                <code value="NI"/>
                <display value="National unique individual identifier"/>
              </coding>
              <text value="IHI"/>
            </type>
            <system value="http://ns.electronichealth.net.au/id/hi/ihi/1.0"/>
            <value value="8003608000228445"/>
          </identifier>
        </subject>
        <requester>
          <display
                   value="Dr Greg Algregster (Algregster Medical Center QLD)"/>
        </requester>
      </ServiceRequest>
    </resource>
  </entry>
  <!-- Patient mhr-anne-thompson -->
  <entry>
    <fullUrl value="urn:uuid:bccc1479-bcd8-4478-a433-b271576003e3"/>
    <resource>
      <Patient>
        <id value="mhr-anne-thompson"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml"><a name="Patient_mhr-anne-thompson"> </a><p class="res-header-id"><b>Generated Narrative: Patient mhr-anne-thompson</b></p><a name="mhr-anne-thompson"> </a><a name="hcmhr-anne-thompson"> </a><a name="mhr-anne-thompson-en-AU"> </a><p style="border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;">Mrs. Anne Thompson(official) Female, DoB: 1978-10-11 ( IHI: AustalianIHI#8003608000228445)</p><hr/><table class="grid"><tr><td style="background-color: #f3f5da" title="Other Id (see the one above)">Other Id:</td><td colspan="3">Medical record number/123456</td></tr><tr><td style="background-color: #f3f5da" title="Language spoken">Language:</td><td colspan="3"><span title="Codes:{urn:ietf:bcp:47 yub}">Yugambal</span></td></tr><tr><td style="background-color: #f3f5da" title="This extension applies to the Patient, Person, and RelatedPerson resources and is used to indicate whether a person identifies as being of Aboriginal or Torres Strait Islander origin."><a href="https://build.fhir.org/ig/hl7au/au-fhir-base/StructureDefinition-indigenous-status.html">Australian Indigenous Status</a></td><td colspan="3">australian-indigenous-status-1 1: Aboriginal but not Torres Strait Islander origin</td></tr></table></div>
        </text>
        <extension
                   url="http://hl7.org.au/fhir/StructureDefinition/indigenous-status">
          <valueCoding>
            <system
                    value="https://healthterminologies.gov.au/fhir/CodeSystem/australian-indigenous-status-1"/>
            <code value="1"/>
            <display
                     value="Aboriginal but not Torres Strait Islander origin"/>
          </valueCoding>
        </extension>
        <identifier>
          <type>
            <coding>
              <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
              <code value="NI"/>
            </coding>
            <text value="IHI"/>
          </type>
          <system value="http://ns.electronichealth.net.au/id/hi/ihi/1.0"/>
          <value value="8003608000228445"/>
        </identifier>
        <identifier>
          <type>
            <coding>
              <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
              <code value="MR"/>
            </coding>
          </type>
          <system
                  value="http://ns.electronichealth.net.au/id/hpio-scoped/medicalrecord/1.0/8003621566684455"/>
          <value value="123456"/>
          <assigner>
            <display value="Algregster Medical Center"/>
          </assigner>
        </identifier>
        <name>
          <use value="official"/>
          <text value="Mrs. Anne Thompson"/>
          <family value="Thompson"/>
          <given value="Anne"/>
          <prefix value="Mrs"/>
        </name>
        <gender value="female"/>
        <birthDate value="1978-10-11"/>
        <communication>
          <language>
            <coding>
              <system value="urn:ietf:bcp:47"/>
              <code value="yub"/>
            </coding>
            <text value="Yugambal"/>
          </language>
        </communication>
      </Patient>
    </resource>
  </entry>
  <!-- PractitionerRole meyer-adam-microbiologist -->
  <entry>
    <fullUrl value="urn:uuid:0a8c38d1-b44c-4996-ae39-6a1c05a3489c"/>
    <resource>
      <PractitionerRole>
        <id value="meyer-adam-microbiologist"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml"><a name="PractitionerRole_meyer-adam-microbiologist"> </a><p class="res-header-id"><b>Generated Narrative: PractitionerRole meyer-adam-microbiologist</b></p><a name="meyer-adam-microbiologist"> </a><a name="hcmeyer-adam-microbiologist"> </a><a name="meyer-adam-microbiologist-en-AU"> </a><p><b>identifier</b>: HPI-I/8003619900041630</p><p><b>practitioner</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-f4c7c72e-c8fd-40a4-94e2-44e293db0ae2">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p><p><b>organization</b>: <a href="Bundle-report-covid-doc-01.html#urn-uuid-b56e2c36-36a7-4907-9751-1fdb438ca860">Bundle: identifier = UUID:b487469d-810c-40ae-b5a9-c0beb9001c9f; type = document; timestamp = 2022-03-17 11:46:00+1000</a></p><p><b>code</b>: <span title="Codes:{http://snomed.info/sct 159138004}">Microbiologist</span></p><p><b>telecom</b>: ph: (07) 7010 3453(Work)</p></div>
        </text>
        <identifier>
          <type>
            <coding>
              <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
              <code value="NPI"/>
              <display value="National provider identifier"/>
            </coding>
            <text value="HPI-I"/>
          </type>
          <system value="http://ns.electronichealth.net.au/id/hi/hpii/1.0"/>
          <value value="8003619900041630"/>
        </identifier>
        <practitioner>
          <reference value="urn:uuid:f4c7c72e-c8fd-40a4-94e2-44e293db0ae2"/>
        </practitioner>
        <organization>
          <reference value="urn:uuid:b56e2c36-36a7-4907-9751-1fdb438ca860"/>
        </organization>
        <code>
          <coding>
            <system value="http://snomed.info/sct"/>
            <code value="159138004"/>
          </coding>
          <text value="Microbiologist"/>
        </code>
        <telecom>
          <system value="phone"/>
          <value value="(07) 7010 3453"/>
          <use value="work"/>
        </telecom>
      </PractitionerRole>
    </resource>
  </entry>
  <!-- Practitioner meyer-adam -->
  <entry>
    <fullUrl value="urn:uuid:f4c7c72e-c8fd-40a4-94e2-44e293db0ae2"/>
    <resource>
      <Practitioner>
        <id value="f4c7c72e-c8fd-40a4-94e2-44e293db0ae2"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml"><a name="Practitioner_f4c7c72e-c8fd-40a4-94e2-44e293db0ae2"> </a><p class="res-header-id"><b>Generated Narrative: Practitioner f4c7c72e-c8fd-40a4-94e2-44e293db0ae2</b></p><a name="f4c7c72e-c8fd-40a4-94e2-44e293db0ae2"> </a><a name="hcf4c7c72e-c8fd-40a4-94e2-44e293db0ae2"> </a><a name="f4c7c72e-c8fd-40a4-94e2-44e293db0ae2-en-AU"> </a><p><b>name</b>: Adam MEYER </p><p><b>address</b>: 75 Hampden St DOOMBEN QLD 4007 AU (work)</p></div>
        </text>
        <name>
          <family value="MEYER"/>
          <given value="Adam"/>
          <prefix value="Dr."/>
        </name>
        <address>
          <use value="work"/>
          <line value="75 Hampden St"/>
          <city value="DOOMBEN"/>
          <state value="QLD"/>
          <postalCode value="4007"/>
          <country value="AU"/>
        </address>
      </Practitioner>
    </resource>
  </entry>
  <!-- Organization metro-qld-path-lab -->
  <entry>
    <fullUrl value="urn:uuid:b56e2c36-36a7-4907-9751-1fdb438ca860"/>
    <resource>
      <Organization>
        <id value="b56e2c36-36a7-4907-9751-1fdb438ca860"/>
        <text>
          <status value="generated"/>
          <div xmlns="http://www.w3.org/1999/xhtml"><a name="Organization_b56e2c36-36a7-4907-9751-1fdb438ca860"> </a><p class="res-header-id"><b>Generated Narrative: Organization b56e2c36-36a7-4907-9751-1fdb438ca860</b></p><a name="b56e2c36-36a7-4907-9751-1fdb438ca860"> </a><a name="hcb56e2c36-36a7-4907-9751-1fdb438ca860"> </a><a name="b56e2c36-36a7-4907-9751-1fdb438ca860-en-AU"> </a><p><b>identifier</b>: HPI-O/8003623233366565, NATA Accreditation Number/100101</p><p><b>name</b>: Doomben Pathology QLD</p><p><b>telecom</b>: <a href="mailto:info@doombenpathlabs.example.com">info@doombenpathlabs.example.com</a>, ph: (07) 5550 3427(Work)</p><p><b>address</b>: 75 Hampden St DOOMBEN QLD 4007 AU (work)</p></div>
        </text>
        <identifier>
          <type>
            <coding>
              <system
                      value="http://terminology.hl7.org.au/CodeSystem/v2-0203"/>
              <code value="NOI"/>
            </coding>
            <text value="HPI-O"/>
          </type>
          <system value="http://ns.electronichealth.net.au/id/hi/hpio/1.0"/>
          <value value="8003623233366565"/>
        </identifier>
        <identifier>
          <type>
            <coding>
              <system
                      value="http://terminology.hl7.org.au/CodeSystem/v2-0203"/>
              <code value="NATAA"/>
              <display value="NATA Accreditation Number"/>
            </coding>
            <text value="NATA Accreditation Number"/>
          </type>
          <system value="http://hl7.org.au/id/nata-accreditation"/>
          <!-- In Australia NATA numbers are an
        incremental number that have been incremented to 5 digits, this example uses a fictional
        NATA number from 100,000 + to ensure no conflict with real world values -->
          <value value="100101"/>
        </identifier>
        <name value="Doomben Pathology QLD"/>
        <telecom>
          <system value="email"/>
          <value value="info@doombenpathlabs.example.com"/>
          <use value="work"/>
        </telecom>
        <telecom>
          <system value="phone"/>
          <value value="(07) 5550 3427"/>
          <use value="work"/>
        </telecom>
        <address>
          <use value="work"/>
          <type value="physical"/>
          <line value="75 Hampden St"/>
          <city value="DOOMBEN"/>
          <state value="QLD"/>
          <postalCode value="4007"/>
          <country value="AU"/>
        </address>
      </Organization>
    </resource>
  </entry>
</Bundle>