Simple genetic pedigree tree example with double cousin replationship

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/List/example-double-cousin-relationship> a fhir:List ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "example-double-cousin-relationship"] ; # 
  fhir:contained ( [
     a fhir:FamilyMemberHistory ;
     fhir:id [ fhir:v "1" ] ;
     fhir:status [ fhir:v "completed" ] ;
     fhir:patient [
       fhir:link <http://hl7.org/fhir/Patient/example> ;
       fhir:reference [ fhir:v "Patient/example" ] ;
       fhir:display [ fhir:v "Pam Taylor" ]
     ] ;
     fhir:name [ fhir:v "Mary" ] ;
     fhir:relationship [
       fhir:coding ( [
         fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "NMTH" ] ;
         fhir:display [ fhir:v "natural mother" ]
       ] ) ;
       fhir:text [ fhir:v "natural mother" ]
     ] ;
     fhir:deceased [
       a fhir:boolean ;
       fhir:v true
     ] ;
     fhir:condition ( [
       fhir:code [
         fhir:coding ( [
           a sct:73211009 ;
           fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
           fhir:code [ fhir:v "73211009" ] ;
           fhir:display [ fhir:v "Diabetes mellitus" ]
         ] ) ;
         fhir:text [ fhir:v "Diabetes mellitus" ]
       ] ;
       fhir:onset [
         a fhir:Age ;
         fhir:value [ fhir:v "45"^^xsd:decimal ] ;
         fhir:unit [ fhir:v "yr" ] ;
         fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "a" ]
       ]
     ] )
  ] [
     a fhir:FamilyMemberHistory ;
     fhir:id [ fhir:v "2" ] ;
     fhir:status [ fhir:v "completed" ] ;
     fhir:patient [
       fhir:link <http://hl7.org/fhir/Patient/example> ;
       fhir:reference [ fhir:v "Patient/example" ] ;
       fhir:display [ fhir:v "Pam Taylor" ]
     ] ;
     fhir:name [ fhir:v "Bob" ] ;
     fhir:relationship [
       fhir:coding ( [
         fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "PUNCLE" ] ;
         fhir:display [ fhir:v "paternal uncle" ]
       ] ) ;
       fhir:text [ fhir:v "paternal uncle" ]
     ] ;
     fhir:condition ( [
       fhir:code [
         fhir:coding ( [
           a sct:1481000119100 ;
           fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
           fhir:code [ fhir:v "1481000119100" ] ;
           fhir:display [ fhir:v "Diabetes mellitus type 2 without retinopathy" ]
         ] ) ;
         fhir:text [ fhir:v "Diabetes mellitus type 2 without retinopathy" ]
       ] ;
       fhir:onset [
         a fhir:Age ;
         fhir:value [ fhir:v "35"^^xsd:decimal ] ;
         fhir:unit [ fhir:v "yr" ] ;
         fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "a" ]
       ]
     ] )
  ] [
     a fhir:FamilyMemberHistory ;
     fhir:id [ fhir:v "3" ] ;
     fhir:status [ fhir:v "completed" ] ;
     fhir:patient [
       fhir:link <http://hl7.org/fhir/Patient/example> ;
       fhir:reference [ fhir:v "Patient/example" ] ;
       fhir:display [ fhir:v "Pam Taylor" ]
     ] ;
     fhir:name [ fhir:v "Jon" ] ;
     fhir:relationship [
       fhir:coding ( [
         fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "MUNCLE" ] ;
         fhir:display [ fhir:v "maternal uncle" ]
       ] ) ;
       fhir:text [ fhir:v "maternal uncle" ]
     ]
  ] [
     a fhir:FamilyMemberHistory ;
     fhir:id [ fhir:v "4" ] ;
     fhir:extension ( [
       fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-sibling"^^xsd:anyURI ] ;
       fhir:extension ( [
         fhir:url [ fhir:v "type"^^xsd:anyURI ] ;
         fhir:value [
           a fhir:CodeableConcept ;
           fhir:coding ( [
             fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
             fhir:code [ fhir:v "NSIS" ] ;
             fhir:display [ fhir:v "natural sister" ]
           ] ) ;
           fhir:text [ fhir:v "natural sister" ]
         ]
       ] [
         fhir:url [ fhir:v "reference"^^xsd:anyURI ] ;
         fhir:value [
           a fhir:Reference ;
           fhir:link <http://hl7.org/fhir/FamilyMemberHistory/mother> ;
           fhir:reference [ fhir:v "FamilyMemberHistory/mother" ] ; #  It is fake. 
           fhir:display [ fhir:v "paternal grandmother" ]
         ]
       ] )
     ] ) ;
     fhir:status [ fhir:v "completed" ] ;
     fhir:patient [
       fhir:link <http://hl7.org/fhir/Patient/example> ;
       fhir:reference [ fhir:v "Patient/example" ] ;
       fhir:display [ fhir:v "Pam Taylor" ]
     ] ;
     fhir:name [ fhir:v "Alica" ] ;
     fhir:relationship [
       fhir:coding ( [
         fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "MGRMTH" ] ;
         fhir:display [ fhir:v "maternal grandmother" ]
       ] ) ;
       fhir:text [ fhir:v "maternal grandmother" ]
     ] ; #  This is a new relationship that here is a maternal grandmother who is paternal grandmonther's sibling  
     fhir:age [
       a fhir:Age ;
       fhir:value [ fhir:v "70"^^xsd:decimal ] ;
       fhir:unit [ fhir:v "yr" ] ;
       fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "a" ]
     ]
  ] [
     a fhir:FamilyMemberHistory ;
     fhir:id [ fhir:v "5" ] ;
     fhir:extension ( [
       fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-parent"^^xsd:anyURI ] ;
       fhir:extension ( [
         fhir:url [ fhir:v "type"^^xsd:anyURI ] ;
         fhir:value [
           a fhir:CodeableConcept ;
           fhir:coding ( [
             fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
             fhir:code [ fhir:v "MTH" ] ;
             fhir:display [ fhir:v "mother" ]
           ] ) ;
           fhir:text [ fhir:v "mother" ]
         ]
       ] [
         fhir:url [ fhir:v "reference"^^xsd:anyURI ] ;
         fhir:value [
           a fhir:Reference ;
           fhir:link <http://hl7.org/fhir/FamilyMemberHistory/147146> ;
           fhir:reference [ fhir:v "FamilyMemberHistory/147146" ] ;
           fhir:display [ fhir:v "maternal grandmother" ]
         ]
       ] )
     ] ) ;
     fhir:status [ fhir:v "completed" ] ;
     fhir:patient [
       fhir:link <http://hl7.org/fhir/Patient/example> ;
       fhir:reference [ fhir:v "Patient/example" ] ;
       fhir:display [ fhir:v "Pam Taylor" ]
     ] ;
     fhir:name [ fhir:v "Aunt with Parent ID" ] ;
     fhir:relationship [
       fhir:coding ( [
         fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "MAUNT" ] ;
         fhir:display [ fhir:v "maternal aunt" ]
       ] ) ;
       fhir:text [ fhir:v "maternal aunt" ]
     ] ;
     fhir:sex [
       fhir:coding ( [
         fhir:system [ fhir:v "http://hl7.org/fhir/administrative-gender"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "female" ] ;
         fhir:display [ fhir:v "Female" ]
       ] )
     ] ;
     fhir:age [
       a fhir:Age ;
       fhir:value [ fhir:v "55"^^xsd:decimal ] ;
       fhir:unit [ fhir:v "yr" ] ;
       fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "a" ]
     ]
  ] [
     a fhir:FamilyMemberHistory ;
     fhir:id [ fhir:v "6" ] ;
     fhir:extension ( [
       fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/family-member-history-genetics-sibling"^^xsd:anyURI ] ;
       fhir:extension ( [
         fhir:url [ fhir:v "type"^^xsd:anyURI ] ;
         fhir:value [
           a fhir:CodeableConcept ;
           fhir:coding ( [
             fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
             fhir:code [ fhir:v "NBRO" ] ;
             fhir:display [ fhir:v "natural brother" ]
           ] ) ;
           fhir:text [ fhir:v "natural brother" ]
         ]
       ] [
         fhir:url [ fhir:v "reference"^^xsd:anyURI ] ;
         fhir:value [
           a fhir:Reference ;
           fhir:link <http://hl7.org/fhir/FamilyMemberHistory/father> ;
           fhir:reference [ fhir:v "FamilyMemberHistory/father" ] ; #  It is fake. 
           fhir:display [ fhir:v "maternal grandfather" ]
         ]
       ] )
     ] ) ;
     fhir:status [ fhir:v "completed" ] ;
     fhir:patient [
       fhir:link <http://hl7.org/fhir/Patient/example> ;
       fhir:reference [ fhir:v "Patient/example" ] ;
       fhir:display [ fhir:v "Pam Taylor" ]
     ] ;
     fhir:name [ fhir:v "Paul" ] ;
     fhir:relationship [
       fhir:coding ( [
         fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-RoleCode"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "PGRFTH" ] ;
         fhir:display [ fhir:v "Paternal grandfather" ]
       ] ) ;
       fhir:text [ fhir:v "Paternal grandfather" ]
     ] ; #  This is a new relationship that here is a maternal grandmother who is paternal grandmonther's sibling  
     fhir:age [
       a fhir:Age ;
       fhir:value [ fhir:v "74"^^xsd:decimal ] ;
       fhir:unit [ fhir:v "yr" ] ;
       fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "b" ]
     ]
  ] ) ; # 
  fhir:status [ fhir:v "current"] ; # 
  fhir:mode [ fhir:v "snapshot"] ; # 
  fhir:code [
     fhir:coding ( [
       a loinc:80738-8 ;
       fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "80738-8" ] ;
       fhir:display [ fhir:v "TPMT gene mutations found [Identifier] in Blood or Tissue by Sequencing Nominal" ]
     ] ) ;
     fhir:text [ fhir:v "TPMT gene mutations found [Identifier] in Blood or Tissue by Sequencing Nominal" ]
  ] ; # 
  fhir:subject ( [
     fhir:link <http://hl7.org/fhir/Patient/example> ;
     fhir:reference [ fhir:v "Patient/example" ] ;
     fhir:display [ fhir:v "Pam Taylor" ]
  ] ) ; # 
  fhir:entry ( [
     fhir:item [
       fhir:reference [ fhir:v "#1" ]
     ]
  ] [
     fhir:item [
       fhir:reference [ fhir:v "#2" ]
     ]
  ] [
     fhir:item [
       fhir:reference [ fhir:v "#3" ]
     ]
  ] [
     fhir:item [
       fhir:reference [ fhir:v "#4" ]
     ]
  ] [
     fhir:item [
       fhir:reference [ fhir:v "#5" ]
     ]
  ] [
     fhir:item [
       fhir:reference [ fhir:v "#6" ]
     ]
  ] ) . # 

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

<http://hl7.org/fhir/FamilyMemberHistory/mother> a fhir:FamilyMemberHistory .

<http://hl7.org/fhir/FamilyMemberHistory/147146> a fhir:FamilyMemberHistory .

<http://hl7.org/fhir/FamilyMemberHistory/father> a fhir:FamilyMemberHistory .

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